Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241808388 . C A CCDS2543.1:NM_000030.2:c.106Cgc>Agc_NP_000021.1:p.36R>S Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 ARG A:36 A:36 82.0 0.364 H -66.1 -33.5 66.0 0.293 0.071 A:P21549:0.071
 GOL
GOL
HOH
 5.129
8.647
2.797
 CB
NH2
N
 C1
O3
O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 ARG A:36 A:36 78.0 0.347 H -73.8 -37.4 65.0 0.289 0.058 A:P21549:0.058
 HOH
 2.629
 O
 O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 ARG A:36 A:36 82.0 0.364 H -65.0 -39.7 70.0 0.311 0.053 A:P21549:0.053
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 ARG A:36 A:36 100.0 0.444 H -62.0 -38.9 92.0 0.409 0.035 A:P21549:0.036
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 ARG A:38 A:36 85.0 0.378 H -71.0 -31.1 72.0 0.32 0.058 C:P21549:0.058
 HOH
 2.570
 NH2
 O
ARG C:38 C:36 74.0 0.329 H -72.3 -31.1 65.0 0.289 0.04 A:P21549:0.04
 HOH
 2.698
 NH2
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 ARG A:36 A:36 75.0 0.333 H -63.4 -39.3 61.0 0.271 0.062 A:P21549:0.062
 HOH
 3.183
 N
 O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 ARG A:38 A:36 82.0 0.364 H -63.9 -34.9 68.0 0.302 0.062 B:P21549:0.062
 BME
HOH
 9.234
2.637
 NH2
NH1
 S2
O
ARG B:38 C:36 79.0 0.351 H -67.7 -35.4 67.0 0.298 0.053 A:P21549:0.053
 BME
HOH
 9.803
2.695
 NH2
NH2
 S2
O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 ARG A:38 A:36 80.0 0.356 H -57.1 -37.2 65.0 0.289 0.067 B:P21549:0.067
ARG B:38 B:36 82.0 0.364 H -54.5 -39.1 70.0 0.311 0.053 A:P21549:0.053
ARG C:38 C:36 82.0 0.364 H -55.7 -38.8 NA NA NA
ARG D:38 D:36 82.0 0.364 H -54.2 -39.0 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 ARG A:36 A:36 83.0 0.369 H -58.8 -40.6 83.0 0.369 0.0 GOL
HOH
 4.468
2.834
 CG
O
 O1
O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 ARG A:47 A:36 87.0 0.387 H -66.2 -33.3 73.0 0.324 0.063 B:P21549:0.062
 HOH
 2.764
 O
 O
ARG B:47 B:36 77.0 0.342 H -64.1 -36.2 66.0 0.293 0.049 A:P21549:0.049
 HOH
 2.807
 O
 O
ARG C:47 E:36 85.0 0.378 H -61.4 -36.1 NA NA NA
ARG D:47 G:36 79.0 0.351 H -60.6 -36.1 NA NA NA
ARG E:47 M:36 83.0 0.369 H -63.9 -35.9 NA NA NA
ARG F:47 N:36 82.0 0.364 H -63.3 -33.8 NA NA NA
ARG G:47 S:36 81.0 0.36 H -59.4 -38.5 NA NA NA
ARG H:47 T:36 78.0 0.347 H -60.7 -38.9 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 ARG A:38 A:36 80.0 0.356 H -59.5 -32.8 68.0 0.302 0.054 B:P21549:0.053
 HOH
 5.024
 N
 O
ARG B:38 C:36 78.0 0.347 H -56.2 -36.4 66.0 0.293 0.054 A:P21549:0.053
 HOH
 2.891
 N
 O
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 ARG A:36 A:36 82.0 0.364 H -62.7 -32.6 72.0 0.32 0.044 A:P21549:0.044
 HOH
 2.657
 O
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 ARG A:36 A:36 81.0 0.36 H -62.7 -42.2 68.0 0.302 0.058 A:P21549:0.058
 HOH
 2.423
 O
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 ARG A:31 A:36 78.0 0.347 H -67.1 -32.1 67.0 0.298 0.049 B:P21549:0.049
 HOH
 2.147
 H
 O
ARG B:31 B:36 87.0 0.387 H -65.1 -34.9 72.0 0.32 0.067 A:P21549:0.067
 HOH
 2.647
 O
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 ARG A:31 A:36 76.0 0.338 H -64.9 -31.5 65.0 0.289 0.049 B:P21549:0.049
 HOH
 2.069
 HH22
 O
ARG B:31 B:36 77.0 0.342 H -66.9 -34.6 62.0 0.276 0.066 A:P21549:0.067
 HOH
 4.848
 O
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 ARG A:36 A:36 84.0 0.373 H -62.7 -33.2 73.0 0.324 0.049 B:P21549:0.049
 GOL
HOH
 7.120
2.667
 O
O
 C3
O
ARG B:36 B:36 78.0 0.347 H -67.7 -32.7 66.0 0.293 0.054 A:P21549:0.053
 GOL
HOH
 8.012
2.807
 O
O
 O1
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 ARG A:36 A:36 86.0 0.382 H -64.6 -38.5