Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241808403 . G A CCDS2543.1:NM_000030.2:c.121Ggg>Agg_NP_000021.1:p.41G>R Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 GLY A:41 A:41 35.0 0.467 H -64.8 -28.2 4.0 0.053 0.414 A:P21549:0.413
 HOH
 2.648
 O
 O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 GLY A:41 A:41 37.0 0.493 H -62.8 -29.4 6.0 0.08 0.413 A:P21549:0.413
 HOH
 2.518
 O
 O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 GLY A:41 A:41 40.0 0.533 H -63.9 -18.4 5.0 0.067 0.466 A:P21549:0.467
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 GLY A:41 A:41 36.0 0.48 H -61.3 -25.1 6.0 0.08 0.4 A:P21549:0.4
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 GLY A:43 A:41 36.0 0.48 T -64.4 -16.2 5.0 0.067 0.413 C:P21549:0.413
 HOH
 2.703
 O
 O
GLY C:43 C:41 36.0 0.48 H -63.2 -20.6 4.0 0.053 0.427 A:P21549:0.427
 HOH
 2.568
 O
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 GLY A:41 A:41 36.0 0.48 T -66.8 -13.9 4.0 0.053 0.427 A:P21549:0.427
 HOH
 7.526
 O
 O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 GLY A:43 A:41 36.0 0.48 H -73.1 -15.4 5.0 0.067 0.413 B:P21549:0.413
 BME
HOH
 6.363
2.792
 O
O
 S2
O
GLY B:43 C:41 37.0 0.493 H -67.8 -17.3 6.0 0.08 0.413 A:P21549:0.413
 BME
HOH
 6.270
2.751
 CA
O
 S2
O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 GLY A:43 A:41 33.0 0.44 H -66.2 -19.8 5.0 0.067 0.373 B:P21549:0.373
GLY B:43 B:41 33.0 0.44 H -64.7 -20.4 6.0 0.08 0.36 A:P21549:0.36
GLY C:43 C:41 33.0 0.44 H -66.9 -20.0 NA NA NA
GLY D:43 D:41 35.0 0.467 H -65.4 -21.4 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 GLY A:41 A:41 38.0 0.507 T -62.8 -8.6 38.0 0.507 0.0 HOH
 2.784
 O
 O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 GLY A:52 A:41 36.0 0.48 H -64.2 -19.1 7.0 0.093 0.387 B:P21549:0.387
 HOH
 2.749
 O
 O
GLY B:52 B:41 33.0 0.44 H -62.6 -17.0 5.0 0.067 0.373 A:P21549:0.373
 HOH
 2.790
 O
 O
GLY C:52 E:41 37.0 0.493 H -57.8 -20.2 NA NA NA
GLY D:52 G:41 37.0 0.493 H -64.3 -14.9 NA NA NA
GLY E:52 M:41 36.0 0.48 H -61.9 -19.1 NA NA NA
GLY F:52 N:41 36.0 0.48 H -67.5 -15.6 NA NA NA
GLY G:52 S:41 35.0 0.467 H -65.0 -17.7 NA NA NA
GLY H:52 T:41 36.0 0.48 H -60.8 -18.3 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 GLY A:43 A:41 37.0 0.493 H -71.5 -13.0 5.0 0.067 0.426 B:P21549:0.427
 HOH
 8.024
 N
 O
GLY B:43 C:41 34.0 0.453 H -58.3 -22.7 4.0 0.053 0.4 A:P21549:0.4
 HOH
 8.409
 O
 O
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 GLY A:41 A:41 34.0 0.453 H -66.9 -29.0 6.0 0.08 0.373 A:P21549:0.373
 HOH
 2.591
 N
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 GLY A:41 A:41 35.0 0.467 H -65.5 -23.9 6.0 0.08 0.387 A:P21549:0.387
 HOH
 2.663
 O
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 GLY A:36 A:41 38.0 0.507 H -70.2 -17.3 6.0 0.08 0.427 B:P21549:0.427
 HOH
 2.571
 O
 O
GLY B:36 B:41 36.0 0.48 H -75.8 -11.9 6.0 0.08 0.4 A:P21549:0.4
 HOH
 2.666
 O
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 GLY A:36 A:41 38.0 0.507 H -67.4 -16.6 6.0 0.08 0.427 B:P21549:0.427
 HOH
 2.701
 O
 O
GLY B:36 B:41 36.0 0.48 H -76.7 -11.1 7.0 0.093 0.387 A:P21549:0.387
 HOH
 2.643
 O
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 GLY A:41 A:41 36.0 0.48 H -67.0 -15.6 6.0 0.08 0.4 B:P21549:0.4
 GOL
HOH
 5.340
2.736
 C
O
 C1
O
GLY B:41 B:41 36.0 0.48 H -68.1 -17.2 7.0 0.093 0.387 A:P21549:0.387
 GOL
HOH
 5.472
2.734
 C
O
 C1
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 GLY A:41 A:41 43.0 0.573 T -66.1 -18.0