Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241808407 . G A CCDS2543.1:NM_000030.2:c.125gGg>gAg_NP_000021.1:p.42G>E Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 GLY A:42 A:42 68.0 0.907 T -94.0 14.0 20.0 0.267 0.64 A:P21549:0.64
 HOH
 3.476
 O
 O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 GLY A:42 A:42 72.0 0.96 T -92.3 15.7 22.0 0.293 0.667 A:P21549:0.667
 HOH
 3.851
 C
 O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 GLY A:42 A:42 69.0 0.92 T -99.0 4.2 19.0 0.253 0.667 A:P21549:0.667
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 GLY A:42 A:42 69.0 0.92 T -97.7 11.4 20.0 0.267 0.653 A:P21549:0.653
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 GLY A:44 A:42 68.0 0.907 T -105.0 8.1 18.0 0.24 0.667 C:P21549:0.667
 HOH
 3.623
 CA
 O
GLY C:44 C:42 66.0 0.88 T -98.4 10.9 19.0 0.253 0.627 A:P21549:0.627
 HOH
 3.355
 C
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 GLY A:42 A:42 68.0 0.907 T -99.5 11.7 20.0 0.267 0.64 A:P21549:0.64
 HOH
 9.423
 N
 O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 GLY A:44 A:42 68.0 0.907 T -96.8 10.6 20.0 0.267 0.64 B:P21549:0.64
 BME
HOH
 8.525
2.946
 N
O
 S2
O
GLY B:44 C:42 68.0 0.907 T -98.5 15.5 21.0 0.28 0.627 A:P21549:0.627
 BME
HOH
 8.393
3.258
 N
O
 S2
O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 GLY A:44 A:42 70.0 0.933 T -100.6 9.5 20.0 0.267 0.666 B:P21549:0.667
GLY B:44 B:42 68.0 0.907 T -100.7 8.0 17.0 0.227 0.68 A:P21549:0.68
GLY C:44 C:42 71.0 0.947 T -99.3 6.9 NA NA NA
GLY D:44 D:42 69.0 0.92 T -101.1 10.0 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 GLY A:42 A:42 67.0 0.893 T -105.8 9.8 67.0 0.893 0.0 HOH
 3.754
 C
 O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 GLY A:53 A:42 71.0 0.947 T -97.2 7.7 20.0 0.267 0.68 B:P21549:0.68
 HOH
 2.907
 O
 O
GLY B:53 B:42 68.0 0.907 T -96.2 8.1 19.0 0.253 0.654 A:P21549:0.653
 HOH
 2.907
 O
 O
GLY C:53 E:42 69.0 0.92 T -98.0 10.6 NA NA NA
GLY D:53 G:42 67.0 0.893 T -95.0 6.1 NA NA NA
GLY E:53 M:42 68.0 0.907 T -96.7 8.3 NA NA NA
GLY F:53 N:42 69.0 0.92 T -98.5 10.1 NA NA NA
GLY G:53 S:42 68.0 0.907 T -97.9 11.3 NA NA NA
GLY H:53 T:42 67.0 0.893 T -100.8 13.1 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 GLY A:44 A:42 67.0 0.893 T -93.0 2.8 21.0 0.28 0.613 B:P21549:0.613
 HOH
 7.977
 N
 O
GLY B:44 C:42 66.0 0.88 T -86.3 -3.3 18.0 0.24 0.64 A:P21549:0.64
 HOH
 4.890
 O
 O
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 GLY A:42 A:42 70.0 0.933 T -89.9 14.1 19.0 0.253 0.68 A:P21549:0.68
 HOH
 3.483
 C
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 GLY A:42 A:42 70.0 0.933 T -97.1 9.6 18.0 0.24 0.693 A:P21549:0.693
 HOH
 3.113
 O
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 GLY A:37 A:42 68.0 0.907 T -94.4 7.9 18.0 0.24 0.667 B:P21549:0.667
 HOH
 2.728
 HA3
 O
GLY B:37 B:42 68.0 0.907 T -95.7 10.5 19.0 0.253 0.654 A:P21549:0.653
 HOH
 2.632
 O
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 GLY A:37 A:42 67.0 0.893 T -96.3 11.8 19.0 0.253 0.64 B:P21549:0.64
 HOH
 2.800
 HA3
 O
GLY B:37 B:42 68.0 0.907 T -95.6 12.5 19.0 0.253 0.654 A:P21549:0.653
 HOH
 2.662
 O
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 GLY A:42 A:42 68.0 0.907 T -99.7 8.9 20.0 0.267 0.64 B:P21549:0.64
 GOL
HOH
 3.589
2.576
 CA
O
 C1
O
GLY B:42 B:42 67.0 0.893 T -98.2 11.4 18.0 0.24 0.653 A:P21549:0.653
 GOL
HOH
 3.158
3.159
 O
O
 O3
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 GLY A:42 A:42 71.0 0.947 T -98.6 3.8