Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241808410 . T A CCDS2543.1:NM_000030.2:c.128cTg>cAg_NP_000021.1:p.43L>Q Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 LEU A:43 A:43 106.0 0.624 -81.8 160.7 58.0 0.341 0.283 A:P21549:0.282
 GOL
HOH
 8.879
2.818
 CD1
O
 C3
O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 LEU A:43 A:43 103.0 0.606 -85.2 167.6 57.0 0.335 0.271 A:P21549:0.271
 HOH
 2.840
 O
 O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 LEU A:43 A:43 103.0 0.606 S -77.7 171.3 53.0 0.312 0.294 A:P21549:0.294
 HOH
 9.514
 CD1
 O
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 LEU A:43 A:43 102.0 0.6 S -82.2 171.7 55.0 0.324 0.276 A:P21549:0.276
 HOH
 8.855
 CD1
 O
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 LEU A:45 A:43 103.0 0.606 S -73.8 163.4 56.0 0.329 0.277 C:P21549:0.276
 HOH
 3.152
 O
 O
LEU C:45 C:43 99.0 0.582 -79.8 158.4 54.0 0.318 0.264 A:P21549:0.265
 HOH
 2.715
 O
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 LEU A:43 A:43 105.0 0.618 -90.9 165.3 59.0 0.347 0.271 A:P21549:0.271
 HOH
 8.352
 O
 O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 LEU A:45 A:43 105.0 0.618 -82.5 164.8 57.0 0.335 0.283 B:P21549:0.282
 BME
BME
HOH
 8.605
9.068
2.799
 O
CD1
O
 C1
S2
O
LEU B:45 C:43 103.0 0.606 S -84.4 166.6 54.0 0.318 0.288 A:P21549:0.288
 BME
BME
HOH
 9.942
9.314
2.919
 N
CD1
O
 S2
S2
O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 LEU A:45 A:43 104.0 0.612 S -80.3 165.0 58.0 0.341 0.271 B:P21549:0.271
LEU B:45 B:43 102.0 0.6 S -78.5 165.7 61.0 0.359 0.241 A:P21549:0.241
LEU C:45 C:43 106.0 0.624 S -77.5 166.2 NA NA NA
LEU D:45 D:43 102.0 0.6 S -79.7 165.4 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 LEU A:43 A:43 100.0 0.588 S -84.2 167.5 100.0 0.588 0.0 HOH
 2.863
 O
 O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 LEU A:54 A:43 102.0 0.6 -82.9 163.2 58.0 0.341 0.259 B:P21549:0.259
 HOH
 2.866
 O
 O
LEU B:54 B:43 101.0 0.594 -82.8 162.9 55.0 0.324 0.27 A:P21549:0.271
 HOH
 2.804
 O
 O
LEU C:54 E:43 101.0 0.594 -84.1 163.8 NA NA NA
LEU D:54 G:43 101.0 0.594 -79.7 163.8 NA NA NA
LEU E:54 M:43 103.0 0.606 -80.7 163.2 NA NA NA
LEU F:54 N:43 104.0 0.612 -80.9 165.1 NA NA NA
LEU G:54 S:43 103.0 0.606 -78.3 168.2 NA NA NA
LEU H:54 T:43 104.0 0.612 -83.8 166.3 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 LEU A:45 A:43 106.0 0.624 S -89.9 164.0 61.0 0.359 0.265 B:P21549:0.265
 HOH
 9.115
 CD1
 O
LEU B:45 C:43 106.0 0.624 S -81.8 160.8 59.0 0.347 0.277 A:P21549:0.276
 HOH
 7.108
 N
 O
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 LEU A:43 A:43 99.0 0.582 -82.7 161.4 52.0 0.306 0.276 A:P21549:0.276
 HOH
 2.835
 O
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 LEU A:43 A:43 102.0 0.6 -84.4 169.4 57.0 0.335 0.265 A:P21549:0.265
 HOH
 2.971
 O
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 LEU A:38 A:43 105.0 0.618 -83.8 165.5 55.0 0.324 0.294 B:P21549:0.294
 HOH
 2.753
 O
 O
LEU B:38 B:43 104.0 0.612 S -85.7 162.5 56.0 0.329 0.283 A:P21549:0.282
 HOH
 2.761
 O
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 LEU A:38 A:43 106.0 0.624 -86.5 165.4 54.0 0.318 0.306 B:P21549:0.306
 HOH
 2.757
 HD22
 O
LEU B:38 B:43 104.0 0.612 -87.6 163.5 56.0 0.329 0.283 A:P21549:0.282
 HOH
 2.743
 O
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 LEU A:43 A:43 104.0 0.612 -80.5 164.9 58.0 0.341 0.271 B:P21549:0.271
 GOL
HOH
 5.496
2.918
 N
O
 C1
O
LEU B:43 B:43 102.0 0.6 -83.0 163.8 57.0 0.335 0.265 A:P21549:0.265
 GOL
HOH
 5.196
2.953
 N
O
 C3
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 LEU A:43 A:43 101.0 0.594 -74.5 158.7