Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241808412 . C A CCDS2543.1:NM_000030.2:c.130Cag>Aag_NP_000021.1:p.44Q>K Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 GLN A:44 A:44 165.0 0.917 -71.4 168.1 50.0 0.278 0.639 A:P21549:0.639
 GOL
HOH
 9.464
3.168
 CG
NE2
 O1
O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 GLN A:44 A:44 160.0 0.889 -83.9 161.7 44.0 0.244 0.645 A:P21549:0.644
 HOH
 4.140
 CG
 O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 GLN A:44 A:44 156.0 0.867 -90.9 156.6 42.0 0.233 0.634 A:P21549:0.633
 HOH
 7.289
 OE1
 O
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 GLN A:44 A:44 158.0 0.878 -89.3 156.6 52.0 0.289 0.589 A:P21549:0.589
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 GLN A:46 A:44 161.0 0.894 -81.0 158.7 41.0 0.228 0.666 C:P21549:0.667
 HOH
 3.040
 NE2
 O
GLN C:46 C:44 161.0 0.894 -72.7 159.8 39.0 0.217 0.677 A:P21549:0.678
 HOH
 2.900
 N
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 GLN A:44 A:44 159.0 0.883 -77.8 160.4 37.0 0.206 0.677 A:P21549:0.678
 HOH
 5.330
 OE1
 O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 GLN A:46 A:44 156.0 0.867 -78.9 158.7 41.0 0.228 0.639 B:P21549:0.639
 BME
HOH
 9.193
2.936
 O
NE2
 O1
O
GLN B:46 C:44 160.0 0.889 -75.9 155.3 42.0 0.233 0.656 A:P21549:0.656
 HOH
 2.648
 NE2
 O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 GLN A:46 A:44 160.0 0.889 -72.8 156.4 35.0 0.194 0.695 B:P21549:0.694
GLN B:46 B:44 158.0 0.878 -72.3 156.1 37.0 0.206 0.672 A:P21549:0.672
GLN C:46 C:44 158.0 0.878 -71.6 153.3 NA NA NA
GLN D:46 D:44 161.0 0.894 -73.2 157.7 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 GLN A:44 A:44 158.0 0.878 -80.7 160.3 158.0 0.878 0.0 HOH
 5.091
 N
 O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 GLN A:55 A:44 157.0 0.872 -77.1 157.4 41.0 0.228 0.644 B:P21549:0.644
 HOH
 2.887
 NE2
 O
GLN B:55 B:44 158.0 0.878 -72.0 156.3 43.0 0.239 0.639 A:P21549:0.639
 HOH
 2.913
 NE2
 O
GLN C:55 E:44 159.0 0.883 -75.4 159.5 NA NA NA
GLN D:55 G:44 157.0 0.872 -76.5 157.3 NA NA NA
GLN E:55 M:44 155.0 0.861 -77.2 157.4 NA NA NA
GLN F:55 N:44 158.0 0.878 -76.9 156.9 NA NA NA
GLN G:55 S:44 155.0 0.861 -81.1 159.3 NA NA NA
GLN H:55 T:44 158.0 0.878 -77.9 156.0 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 GLN A:46 A:44 157.0 0.872 -78.0 157.4 46.0 0.256 0.616 B:P21549:0.617
 HOH
 9.314
 NE2
 O
GLN B:46 C:44 159.0 0.883 -68.8 157.3 41.0 0.228 0.655 A:P21549:0.656
 HOH
 6.871
 NE2
 O
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 GLN A:44 A:44 159.0 0.883 -77.2 161.6 46.0 0.256 0.627 A:P21549:0.628
 HOH
 3.177
 NE2
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 GLN A:44 A:44 159.0 0.883 -81.0 162.9 45.0 0.25 0.633 A:P21549:0.633
 HOH
 3.602
 CB
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 GLN A:39 A:44 157.0 0.872 -78.2 160.2 34.0 0.189 0.683 B:P21549:0.683
 HOH
 1.939
 HE21
 O
GLN B:39 B:44 158.0 0.878 -71.8 157.8 41.0 0.228 0.65 A:P21549:0.65
 HOH
 2.002
 HE21
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 GLN A:39 A:44 155.0 0.861 -78.9 161.2 35.0 0.194 0.667 B:P21549:0.667
 HOH
 2.012
 HE21
 O
GLN B:39 B:44 159.0 0.883 -73.3 158.4 41.0 0.228 0.655 A:P21549:0.656
 HOH
 1.983
 HE21
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 GLN A:44 A:44 162.0 0.9 -76.6 157.4 39.0 0.217 0.683 B:P21549:0.683
 GOL
HOH
 8.526
2.756
 N
NE2
 C1
O
GLN B:44 B:44 160.0 0.889 -75.3 154.7 45.0 0.25 0.639 A:P21549:0.639
 GOL
HOH
 6.689
2.772
 N
N
 O3
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 GLN A:44 A:44 157.0 0.872 -73.9 151.5