Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241808422 . G A CCDS2543.1:NM_000030.2:c.140gGg>gAg_NP_000021.1:p.47G>E Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 GLY A:47 A:47 43.0 0.573 -63.4 132.1 0.0 0.0 0.573 A:P21549:0.573
 AOA
GOL
GOL
HOH
 8.315
9.185
9.954
3.533
 C
CA
O
C
 N1
O3
C1
O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 GLY A:47 A:47 45.0 0.6 -64.9 130.8 0.0 0.0 0.6 A:P21549:0.6
 HOH
 6.038
 N
 O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 GLY A:47 A:47 46.0 0.613 -53.5 127.9 0.0 0.0 0.613 A:P21549:0.613
 HOH
 8.556
 CA
 O
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 GLY A:47 A:47 46.0 0.613 -57.4 127.7 15.0 0.2 0.413 A:P21549:0.413
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 GLY A:49 A:47 42.0 0.56 -55.5 129.7 0.0 0.0 0.56 C:P21549:0.56
 HOH
 3.380
 C
 O
GLY C:49 C:47 43.0 0.573 -64.0 134.3 0.0 0.0 0.573 A:P21549:0.573
 HOH
 3.166
 C
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 GLY A:47 A:47 45.0 0.6 -55.3 125.1 0.0 0.0 0.6 A:P21549:0.6
 DIO
HOH
 8.060
6.936
 C
C
 O1
O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 GLY A:49 A:47 42.0 0.56 -62.0 130.9 0.0 0.0 0.56 B:P21549:0.56
 BME
HOH
 9.682
3.364
 O
C
 O1
O
GLY B:49 C:47 43.0 0.573 -55.0 130.3 0.0 0.0 0.573 A:P21549:0.573
 BME
HOH
 9.718
3.300
 CA
CA
 S2
O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 GLY A:49 A:47 40.0 0.533 -63.5 130.2 0.0 0.0 0.533 B:P21549:0.533
 GOL
 7.880
 C
 O1
GLY B:49 B:47 40.0 0.533 -63.6 129.0 0.0 0.0 0.533 A:P21549:0.533
 GOL
GOL
 7.222
9.257
 C
N
 O3
O1
GLY C:49 C:47 38.0 0.507 -63.1 130.5 NA NA NA
GLY D:49 D:47 39.0 0.52 -63.3 128.2 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 GLY A:47 A:47 41.0 0.547 -58.5 128.0 41.0 0.547 0.0 HOH
 6.364
 C
 O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 GLY A:58 A:47 45.0 0.6 -64.9 135.5 0.0 0.0 0.6 B:P21549:0.6
 HOH
 3.124
 CA
 O
GLY B:58 B:47 42.0 0.56 -61.1 132.2 0.0 0.0 0.56 A:P21549:0.56
 HOH
 3.046
 CA
 O
GLY C:58 E:47 43.0 0.573 -67.7 134.6 NA NA NA
GLY D:58 G:47 44.0 0.587 -64.9 132.0 NA NA NA
GLY E:58 M:47 43.0 0.573 -66.2 133.8 NA NA NA
GLY F:58 N:47 41.0 0.547 -60.9 135.5 NA NA NA
GLY G:58 S:47 43.0 0.573 -63.9 135.4 NA NA NA
GLY H:58 T:47 44.0 0.587 -57.6 132.6 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 GLY A:49 A:47 42.0 0.56 -75.7 118.3 0.0 0.0 0.56 B:P21549:0.56
 HOH
 6.618
 O
 O
GLY B:49 C:47 38.0 0.507 -73.5 125.5 0.0 0.0 0.507 A:P21549:0.507
 BME
 9.605
 C
 S2
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 GLY A:47 A:47 40.0 0.533 -67.0 133.4 1.0 0.013 0.52 A:P21549:0.52
 GOL
HOH
 9.098
3.438
 C
CA
 O3
O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 GLY A:47 A:47 39.0 0.52 -72.9 131.1 2.0 0.027 0.493 A:P21549:0.493
 HOH
 2.890
 N
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 GLY A:42 A:47 44.0 0.587 -57.0 134.2 0.0 0.0 0.587 B:P21549:0.587
 HOH
 2.557
 HA3
 O
GLY B:42 B:47 43.0 0.573 -61.5 133.1 0.0 0.0 0.573 A:P21549:0.573
 HOH
 2.713
 HA3
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 GLY A:42 A:47 45.0 0.6 -57.4 133.7 0.0 0.0 0.6 B:P21549:0.6
 HOH
 2.574
 HA3
 O
GLY B:42 B:47 42.0 0.56 -67.6 134.5 0.0 0.0 0.56 A:P21549:0.56
 HOH
 2.549
 HA3
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 GLY A:47 A:47 44.0 0.587 -59.9 131.9 0.0 0.0 0.587 B:P21549:0.587
 GOL
HOH
 5.676
3.436
 CA
CA
 O3
O
GLY B:47 B:47 41.0 0.547 -62.0 133.8 0.0 0.0 0.547 A:P21549:0.547
 GOL
HOH
 7.799
3.361
 CA
CA
 O3
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 GLY A:47 A:47 47.0 0.627 -62.0 128.2