Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241808608 . G A CCDS2543.1:NM_000030.2:c.187Ggc>Agc_NP_000021.1:p.63G>S Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 GLY A:63 A:63 12.0 0.16 H -64.3 -44.2 1.0 0.013 0.147 A:P21549:0.147
 HOH
 7.163
 N
 O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 GLY A:63 A:63 14.0 0.187 H -56.8 -48.2 1.0 0.013 0.174 A:P21549:0.173
 HOH
 6.219
 N
 O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 GLY A:63 A:63 13.0 0.173 H -59.5 -49.0 1.0 0.013 0.16 A:P21549:0.16
 HOH
 9.044
 O
 O
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 GLY A:63 A:63 16.0 0.213 H -66.2 -43.8 7.0 0.093 0.12 A:P21549:0.12
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 GLY A:65 A:63 11.0 0.147 H -64.4 -38.8 0.0 0.0 0.147 C:P21549:0.147
 HOH
 4.959
 N
 O
GLY C:65 C:63 12.0 0.16 H -55.0 -46.1 1.0 0.013 0.147 A:P21549:0.147
 HOH
 6.904
 N
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 GLY A:63 A:63 12.0 0.16 H -63.0 -33.8 1.0 0.013 0.147 A:P21549:0.147
 HOH
 8.722
 O
 O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 GLY A:65 A:63 13.0 0.173 H -60.7 -43.6 1.0 0.013 0.16 B:P21549:0.16
 HOH
 6.840
 N
 O
GLY B:65 C:63 13.0 0.173 H -59.2 -43.8 1.0 0.013 0.16 A:P21549:0.16
 HOH
 6.923
 N
 O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 GLY A:65 A:63 12.0 0.16 H -57.0 -45.9 0.0 0.0 0.16 B:P21549:0.16
GLY B:65 B:63 14.0 0.187 H -58.4 -45.1 1.0 0.013 0.174 A:P21549:0.173
GLY C:65 C:63 12.0 0.16 H -57.3 -44.6 NA NA NA
GLY D:65 D:63 12.0 0.16 H -57.3 -45.6 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 GLY A:63 A:63 11.0 0.147 H -65.9 -38.9 11.0 0.147 0.0 HOH
 7.540
 N
 O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 GLY A:74 A:63 15.0 0.2 H -60.7 -41.0 1.0 0.013 0.187 B:P21549:0.187
 HOH
 4.868
 N
 O
GLY B:74 B:63 14.0 0.187 H -61.8 -40.7 1.0 0.013 0.174 A:P21549:0.173
 HOH
 4.915
 N
 O
GLY C:74 E:63 15.0 0.2 H -60.7 -40.9 NA NA NA
GLY D:74 G:63 14.0 0.187 H -60.5 -40.9 NA NA NA
GLY E:74 M:63 13.0 0.173 H -60.2 -40.4 NA NA NA
GLY F:74 N:63 13.0 0.173 H -61.2 -40.3 NA NA NA
GLY G:74 S:63 14.0 0.187 H -64.9 -35.6 NA NA NA
GLY H:74 T:63 13.0 0.173 H -64.9 -34.7 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 GLY A:65 A:63 12.0 0.16 H -66.9 -40.6 1.0 0.013 0.147 B:P21549:0.147
GLY B:65 C:63 12.0 0.16 H -62.8 -38.3 1.0 0.013 0.147 A:P21549:0.147
 HOH
 7.357
 N
 O
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 GLY A:63 A:63 12.0 0.16 H -57.8 -42.6 1.0 0.013 0.147 A:P21549:0.147
 HOH
 5.271
 N
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 GLY A:63 A:63 14.0 0.187 H -59.7 -43.0 1.0 0.013 0.174 A:P21549:0.173
 HOH
 6.882
 N
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 GLY A:58 A:63 14.0 0.187 H -64.8 -41.4 1.0 0.013 0.174 B:P21549:0.173
 HOH
 4.731
 N
 O
GLY B:58 B:63 13.0 0.173 H -64.2 -39.3 1.0 0.013 0.16 A:P21549:0.16
 HOH
 4.675
 N
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 GLY A:58 A:63 13.0 0.173 H -62.9 -42.8 1.0 0.013 0.16 B:P21549:0.16
 HOH
 4.709
 N
 O
GLY B:58 B:63 14.0 0.187 H -64.3 -36.6 1.0 0.013 0.174 A:P21549:0.173
 HOH
 4.639
 N
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 GLY A:63 A:63 12.0 0.16 H -63.1 -43.8 1.0 0.013 0.147 B:P21549:0.147
 HOH
 4.809
 N
 O
GLY B:63 B:63 15.0 0.2 H -63.2 -43.0 1.0 0.013 0.187 A:P21549:0.187
 HOH
 4.833
 N
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 GLY A:63 A:63 12.0 0.16 H -60.8 -42.8