Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241808626 . C A CCDS2543.1:NM_000030.2:c.205Cag>Aag_NP_000021.1:p.69Q>K Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 GLN A:69 A:69 70.0 0.389 T 70.7 73.1 2.0 0.011 0.378 A:P21549:0.378
 HOH
 3.188
 O
 O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 GLN A:69 A:69 82.0 0.456 T 56.3 70.7 2.0 0.011 0.445 A:P21549:0.444
 HOH
 4.880
 CG
 O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 GLN A:69 A:69 77.0 0.428 T 65.5 70.6 4.0 0.022 0.406 A:P21549:0.406
 HOH
 5.207
 CG
 O
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 GLN A:69 A:69 80.0 0.444 T 56.4 72.6 6.0 0.033 0.411 A:P21549:0.411
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 GLN A:71 A:69 79.0 0.439 T 56.0 62.7 3.0 0.017 0.422 C:P21549:0.422
 HOH
 2.900
 O
 O
GLN C:71 C:69 81.0 0.45 T 54.4 61.0 3.0 0.017 0.433 A:P21549:0.433
 HOH
 2.705
 O
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 GLN A:69 A:69 78.0 0.433 T 54.5 80.5 10.0 0.056 0.377 A:P21549:0.378
 HOH
 5.215
 N
 O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 GLN A:71 A:69 79.0 0.439 T 56.2 65.2 3.0 0.017 0.422 B:P21549:0.422
 HOH
 3.053
 O
 O
GLN B:71 C:69 80.0 0.444 T 57.3 64.3 4.0 0.022 0.422 A:P21549:0.422
 HOH
 2.790
 O
 O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 GLN A:71 A:69 73.0 0.406 T 64.3 73.4 1.0 0.006 0.4 B:P21549:0.4
GLN B:71 B:69 64.0 0.356 T 65.3 73.1 3.0 0.017 0.339 A:P21549:0.339
GLN C:71 C:69 73.0 0.406 T 65.7 72.4 NA NA NA
GLN D:71 D:69 71.0 0.394 T 65.2 73.7 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 GLN A:69 A:69 81.0 0.45 T 73.9 63.4 81.0 0.45 0.0 GOL
HOH
 6.878
4.775
 O
CG
 O3
O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 GLN A:80 A:69 80.0 0.444 T 59.7 63.3 3.0 0.017 0.427 B:P21549:0.428
 HOH
 2.899
 O
 O
GLN B:80 B:69 70.0 0.389 T 58.8 64.2 8.0 0.044 0.345 A:P21549:0.344
 HOH
 2.761
 O
 O
GLN C:80 E:69 81.0 0.45 T 59.5 61.1 NA NA NA
GLN D:80 G:69 69.0 0.383 T 61.3 62.5 NA NA NA
GLN E:80 M:69 70.0 0.389 T 54.1 66.9 NA NA NA
GLN F:80 N:69 84.0 0.467 T 60.8 62.8 NA NA NA
GLN G:80 S:69 76.0 0.422 T 59.4 63.7 NA NA NA
GLN H:80 T:69 77.0 0.428 T 56.9 61.6 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 GLN A:71 A:69 76.0 0.422 T 55.9 68.1 3.0 0.017 0.405 B:P21549:0.406
 HOH
 8.985
 NE2
 O
GLN B:71 C:69 74.0 0.411 T 59.2 67.3 2.0 0.011 0.4 A:P21549:0.4
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 GLN A:69 A:69 80.0 0.444 T 57.7 74.4 0.0 0.0 0.444 A:P21549:0.444
 HOH
 5.054
 CG
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 GLN A:69 A:69 82.0 0.456 T 63.5 64.3 0.0 0.0 0.456 A:P21549:0.456
 HOH
 3.361
 O
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 GLN A:64 A:69 72.0 0.4 T 61.3 62.1 3.0 0.017 0.383 B:P21549:0.383
 HOH
 2.535
 OE1
 O
GLN B:64 B:69 76.0 0.422 T 61.0 61.5 2.0 0.011 0.411 A:P21549:0.411
 HOH
 2.846
 O
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 GLN A:64 A:69 74.0 0.411 T 61.0 63.5 3.0 0.017 0.394 B:P21549:0.394
 HOH
 2.486
 OE1
 O
GLN B:64 B:69 78.0 0.433 T 63.6 61.1 3.0 0.017 0.416 A:P21549:0.417
 HOH
 2.744
 O
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 GLN A:69 A:69 81.0 0.45 T 57.9 67.9 3.0 0.017 0.433 B:P21549:0.433
 GOL
HOH
 8.120
2.943
 O
O
 C3
O
GLN B:69 B:69 78.0 0.433 T 56.5 62.9 3.0 0.017 0.416 A:P21549:0.417
 HOH
 2.941
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 GLN A:69 A:69 69.0 0.383 T 51.7 57.1