Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241808630 . C A CCDS2543.1:NM_000030.2:c.209aCc>aAc_NP_000021.1:p.70T>N Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 THR A:70 A:70 10.0 0.071 -159.2 164.0 1.0 0.007 0.064 A:P21549:0.064
 HOH
 3.375
 OG1
 O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 THR A:70 A:70 7.0 0.05 -144.9 165.5 1.0 0.007 0.043 A:P21549:0.043
 HOH
 6.878
 O
 O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 THR A:70 A:70 10.0 0.071 -150.7 168.2 0.0 0.0 0.071 A:P21549:0.071
 HOH
 6.670
 OG1
 O
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 THR A:70 A:70 17.0 0.121 -143.7 168.3 2.0 0.014 0.107 A:P21549:0.107
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 THR A:72 A:70 8.0 0.057 -139.8 154.4 0.0 0.0 0.057 C:P21549:0.057
 HOH
 3.097
 O
 O
THR C:72 C:70 10.0 0.071 -136.5 161.1 1.0 0.007 0.064 A:P21549:0.064
 HOH
 4.579
 OG1
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 THR A:70 A:70 14.0 0.1 -153.3 161.0 1.0 0.007 0.093 A:P21549:0.093
 HOH
 8.108
 N
 O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 THR A:72 A:70 10.0 0.071 -138.9 151.1 1.0 0.007 0.064 B:P21549:0.064
 HOH
 3.985
 OG1
 O
THR B:72 C:70 9.0 0.064 -141.8 152.1 1.0 0.007 0.057 A:P21549:0.057
 HOH
 3.829
 OG1
 O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 THR A:72 A:70 11.0 0.079 -147.1 154.5 0.0 0.0 0.079 B:P21549:0.079
THR B:72 B:70 13.0 0.093 -147.9 153.0 0.0 0.0 0.093 A:P21549:0.093
THR C:72 C:70 10.0 0.071 -146.7 153.9 NA NA NA
THR D:72 D:70 10.0 0.071 -146.2 154.3 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 THR A:70 A:70 7.0 0.05 -148.6 165.3 7.0 0.05 0.0 GOL
HOH
 8.222
3.928
 CA
OG1
 O3
O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 THR A:81 A:70 7.0 0.05 -139.0 150.6 1.0 0.007 0.043 B:P21549:0.043
 HOH
 3.192
 O
 O
THR B:81 B:70 6.0 0.043 -141.8 157.5 0.0 0.0 0.043 A:P21549:0.043
 HOH
 3.468
 OG1
 O
THR C:81 E:70 8.0 0.057 -138.5 153.2 NA NA NA
THR D:81 G:70 6.0 0.043 -140.7 154.7 NA NA NA
THR E:81 M:70 7.0 0.05 -146.2 154.5 NA NA NA
THR F:81 N:70 7.0 0.05 -140.7 152.9 NA NA NA
THR G:81 S:70 8.0 0.057 -143.1 157.2 NA NA NA
THR H:81 T:70 7.0 0.05 -138.9 152.2 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 THR A:72 A:70 12.0 0.086 -142.6 155.4 0.0 0.0 0.086 B:P21549:0.086
THR B:72 C:70 10.0 0.071 -146.5 159.6 0.0 0.0 0.071 A:P21549:0.071
 HOH
 6.583
 OG1
 O
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 THR A:70 A:70 9.0 0.064 -159.9 160.6 0.0 0.0 0.064 A:P21549:0.064
 HOH
 3.174
 OG1
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 THR A:70 A:70 13.0 0.093 -147.2 161.3 0.0 0.0 0.093 A:P21549:0.093
 HOH
 5.132
 O
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 THR A:65 A:70 8.0 0.057 -140.3 151.5 1.0 0.007 0.05 B:P21549:0.05
 HOH
 3.445
 HG1
 O
THR B:65 B:70 8.0 0.057 -138.9 150.3 1.0 0.007 0.05 A:P21549:0.05
 HOH
 3.301
 O
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 THR A:65 A:70 9.0 0.064 -142.7 151.1 1.0 0.007 0.057 B:P21549:0.057
 HOH
 3.581
 HG1
 O
THR B:65 B:70 8.0 0.057 -140.3 150.3 1.0 0.007 0.05 A:P21549:0.05
 HOH
 3.157
 O
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 THR A:70 A:70 10.0 0.071 -147.2 155.0 1.0 0.007 0.064 B:P21549:0.064
 GOL
HOH
 5.614
3.783
 OG1
OG1
 C3
O
THR B:70 B:70 9.0 0.064 -139.0 150.3 1.0 0.007 0.057 A:P21549:0.057
 HOH
 3.128
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 THR A:70 A:70 0.0 0.0 -130.4 156.2