Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241808635 . A C CCDS2543.1:NM_000030.2:c.214Aac>Cac_NP_000021.1:p.72N>H Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 ASN A:72 A:72 14.0 0.087 -47.9 123.4 14.0 0.087 0.0 HOH
 2.674
 ND2
 O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 ASN A:72 A:72 13.0 0.081 -47.6 125.9 13.0 0.081 0.0 HOH
 5.117
 O
 O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 ASN A:72 A:72 14.0 0.087 -36.7 116.3 14.0 0.087 0.0 HOH
 3.250
 CB
 O
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 ASN A:72 A:72 14.0 0.087 -44.6 115.1 14.0 0.087 0.0
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 ASN A:74 A:72 17.0 0.106 -48.5 119.8 17.0 0.106 0.0 HOH
 2.691
 ND2
 O
ASN C:74 C:72 19.0 0.119 -59.7 124.7 19.0 0.119 0.0 HOH
 3.111
 OD1
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 ASN A:72 A:72 15.0 0.094 -33.3 113.2 15.0 0.094 0.0 HOH
 5.814
 CA
 O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 ASN A:74 A:72 19.0 0.119 -56.2 118.8 19.0 0.119 0.0 HOH
 2.905
 ND2
 O
ASN B:74 C:72 19.0 0.119 -60.2 121.9 19.0 0.119 0.0 HOH
 2.773
 ND2
 O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 ASN A:74 A:72 18.0 0.113 -51.2 116.3 18.0 0.113 0.0
ASN B:74 B:72 18.0 0.113 -52.0 115.7 18.0 0.113 0.0
ASN C:74 C:72 17.0 0.106 -52.7 117.0 NA NA NA
ASN D:74 D:72 18.0 0.113 -54.4 115.4 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 ASN A:72 A:72 16.0 0.1 -48.5 120.2 16.0 0.1 0.0 GOL
HOH
 8.257
3.278
 ND2
OD1
 C1
O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 ASN A:83 A:72 15.0 0.094 -55.1 125.4 15.0 0.094 0.0 HOH
 2.833
 OD1
 O
ASN B:83 B:72 16.0 0.1 -49.0 126.8 16.0 0.1 0.0 HOH
 2.932
 OD1
 O
ASN C:83 E:72 14.0 0.087 -51.5 123.5 NA NA NA
ASN D:83 G:72 17.0 0.106 -50.7 124.4 NA NA NA
ASN E:83 M:72 15.0 0.094 -49.2 124.4 NA NA NA
ASN F:83 N:72 15.0 0.094 -53.4 129.5 NA NA NA
ASN G:83 S:72 15.0 0.094 -50.9 123.7 NA NA NA
ASN H:83 T:72 15.0 0.094 -53.6 125.9 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 ASN A:74 A:72 18.0 0.113 -53.7 116.0 18.0 0.113 0.0
ASN B:74 C:72 17.0 0.106 -50.1 116.7 17.0 0.106 0.0 HOH
 3.339
 CB
 O
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 ASN A:72 A:72 7.0 0.044 -37.7 117.3 7.0 0.044 0.0 HOH
 3.189
 N
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 ASN A:72 A:72 13.0 0.081 -39.7 121.7 13.0 0.081 0.0 HOH
 3.494
 CB
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 ASN A:67 A:72 19.0 0.119 -60.0 122.6 19.0 0.119 0.0 HOH
 2.101
 HD21
 O
ASN B:67 B:72 19.0 0.119 -56.5 127.5 19.0 0.119 0.0 HOH
 2.137
 HD21
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 ASN A:67 A:72 19.0 0.119 -64.2 126.9 19.0 0.119 0.0 HOH
 2.096
 HD21
 O
ASN B:67 B:72 20.0 0.125 -61.6 126.9 20.0 0.125 0.0 HOH
 2.191
 HD21
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 ASN A:72 A:72 20.0 0.125 -55.7 122.1 20.0 0.125 0.0 GOL
HOH
 2.418
2.758
 OD1
OD1
 O1
O
ASN B:72 B:72 19.0 0.119 -54.8 122.1 19.0 0.119 0.0 HOH
 2.762
 OD1
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 ASN A:72 A:72 16.0 0.1 -57.3 123.9