Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr2 | 241808665 | . | G | A | CCDS2543.1:NM_000030.2:c.244Gga>Aga_NP_000021.1:p.82G>R | Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
1h0c | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2003-06-12 | GLY | A:82 | A:82 | 11.0 | 0.147 | H | -44.2 | -56.9 | 11.0 | 0.147 | 0.0 |
PLP AOA HOH |
2.524 9.131 3.489 |
N N N |
O2P O1 O |
||
5og0 | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2017-09-27 | GLY | A:82 | A:82 | 10.0 | 0.133 | H | -43.9 | -52.8 | 10.0 | 0.133 | 0.0 |
PLP HOH |
2.867 3.388 |
N N |
O1P O |
||
6rv0 | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2020-04-08 | GLY | A:82 | A:82 | 11.0 | 0.147 | H | -33.3 | -72.4 | 11.0 | 0.147 | 0.0 |
PMP HOH |
2.730 3.626 |
N N |
O3P O |
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6rv1 | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2020-04-08 | GLY | A:82 | A:82 | 11.0 | 0.147 | H | -32.9 | -66.5 | 11.0 | 0.147 | 0.0 |
PLP |
2.637 |
N |
O1P |
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3r9a | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2011-05-11 | GLY | A:84 | A:82 | 0.0 | 0.0 | H | -45.9 | -37.4 | 0.0 | 0.0 | 0.0 |
HOH |
3.435 |
N |
O |
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GLY | C:84 | C:82 | 0.0 | 0.0 | H | -42.4 | -37.2 | 0.0 | 0.0 | 0.0 |
HOH |
3.770 |
N |
O |
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5ofy | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2017-09-27 | GLY | A:82 | A:82 | 10.0 | 0.133 | H | -48.5 | -51.5 | 10.0 | 0.133 | 0.0 |
PLP DIO HOH |
2.995 9.010 3.714 |
N N N |
O2P C2 O |
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4kyo | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2014-11-19 | GLY | A:84 | A:82 | 2.0 | 0.027 | T | -34.0 | -59.7 | 2.0 | 0.027 | 0.0 |
SO4 BME HOH |
2.906 9.358 3.252 |
CA N N |
O4 S2 O |
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GLY | B:84 | C:82 | 3.0 | 0.04 | T | -29.2 | -63.0 | 3.0 | 0.04 | 0.0 |
SO4 HOH |
3.124 3.344 |
CA N |
O1 O |
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4i8a | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2013-05-01 | GLY | A:84 | A:82 | 1.0 | 0.013 | H | -58.9 | -37.7 | 1.0 | 0.013 | 0.0 | ||||||
GLY | B:84 | B:82 | 0.0 | 0.0 | H | -57.8 | -37.1 | 0.0 | 0.0 | 0.0 | |||||||||||||
GLY | C:84 | C:82 | 1.0 | 0.013 | H | -58.2 | -36.8 | NA | NA | NA | |||||||||||||
GLY | D:84 | D:82 | 1.0 | 0.013 | H | -57.1 | -37.6 | NA | NA | NA | |||||||||||||
1j04 | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2003-11-11 | GLY | A:82 | A:82 | 0.0 | 0.0 | H | -51.7 | -42.3 | 0.0 | 0.0 | 0.0 |
AOA HOH |
9.878 3.635 |
CA N |
O2 O |
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5luc | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2017-09-20 | GLY | A:93 | A:82 | 10.0 | 0.133 | H | -62.4 | -35.9 | 10.0 | 0.133 | 0.0 |
PLP HOH |
2.908 3.070 |
N O |
O3P O |
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GLY | B:93 | B:82 | 12.0 | 0.16 | H | -58.2 | -40.8 | 12.0 | 0.16 | 0.0 |
PLP HOH |
2.908 3.079 |
N O |
O1P O |
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GLY | C:93 | E:82 | 12.0 | 0.16 | H | -55.3 | -42.0 | NA | NA | NA | |||||||||||||
GLY | D:93 | G:82 | 12.0 | 0.16 | H | -50.0 | -45.8 | NA | NA | NA | |||||||||||||
GLY | E:93 | M:82 | 11.0 | 0.147 | H | -58.1 | -39.7 | NA | NA | NA | |||||||||||||
GLY | F:93 | N:82 | 13.0 | 0.173 | H | -62.6 | -34.8 | NA | NA | NA | |||||||||||||
GLY | G:93 | S:82 | 13.0 | 0.173 | H | -56.3 | -40.0 | NA | NA | NA | |||||||||||||
GLY | H:93 | T:82 | 12.0 | 0.16 | H | -57.4 | -40.2 | NA | NA | NA | |||||||||||||
4kxk | 1 | P21549 | 99.49 | 0.0 |
X-RAY |
2014-11-19 | GLY | A:84 | A:82 | 1.0 | 0.013 | T | -33.7 | -61.7 | 1.0 | 0.013 | 0.0 |
SO4 BME HOH |
2.585 8.800 9.552 |
N CA O |
O1 S2 O |
||
GLY | B:84 | C:82 | 1.0 | 0.013 | T | -33.1 | -67.4 | 1.0 | 0.013 | 0.0 |
SO4 HOH |
2.976 7.279 |
N C |
O1 O |
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4cbr | 1 | P21549 | 99.23 | 0.0 |
X-RAY |
2014-07-09 | GLY | A:82 | A:82 | 11.0 | 0.147 | H | -50.5 | -51.1 | 11.0 | 0.147 | 0.0 |
PLP GOL HOH |
2.819 8.329 3.559 |
N N N |
O3P O1 O |
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4cbs | 1 | P21549 | 98.72 | 0.0 |
X-RAY |
2014-07-09 | GLY | A:82 | A:82 | 7.0 | 0.093 | H | -41.6 | -62.7 | 7.0 | 0.093 | 0.0 |
PLP HOH |
2.839 3.430 |
N N |
O2P O |
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5f9s | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2016-12-21 | GLY | A:77 | A:82 | 10.0 | 0.133 | H | -46.2 | -46.5 | 10.0 | 0.133 | 0.0 |
PLP HOH |
2.321 2.916 |
H H |
O3P O |
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GLY | B:77 | B:82 | 11.0 | 0.147 | H | -55.2 | -40.3 | 11.0 | 0.147 | 0.0 |
PLP HOH |
2.250 2.817 |
H H |
O1P O |
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5hhy | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2017-01-25 | GLY | A:77 | A:82 | 10.0 | 0.133 | H | -46.3 | -48.4 | 10.0 | 0.133 | 0.0 |
PLR HOH |
2.234 3.068 |
H H |
O3P O |
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GLY | B:77 | B:82 | 11.0 | 0.147 | H | -52.1 | -39.7 | 11.0 | 0.147 | 0.0 |
PLR HOH |
2.189 2.824 |
H H |
O1P O |
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2yob | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2013-10-30 | GLY | A:82 | A:82 | 10.0 | 0.133 | H | -52.4 | -43.2 | 10.0 | 0.133 | 0.0 |
PLP HOH |
2.915 3.769 |
N N |
O3P O |
||
GLY | B:82 | B:82 | 11.0 | 0.147 | H | -53.3 | -40.7 | 11.0 | 0.147 | 0.0 |
PLP HOH |
3.091 3.750 |
N N |
O1P O |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-p21549-f1 | 1 | P21549 | 100.0 | 0.0 | GLY | A:82 | A:82 | 7.0 | 0.093 | H | -52.3 | -35.3 |