Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241808666 . G A CCDS2543.1:NM_000030.2:c.245gGa>gAa_NP_000021.1:p.82G>E Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 GLY A:82 A:82 11.0 0.147 H -44.2 -56.9 11.0 0.147 0.0 PLP
AOA
HOH
 2.524
9.131
3.489
 N
N
N
 O2P
O1
O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 GLY A:82 A:82 10.0 0.133 H -43.9 -52.8 10.0 0.133 0.0 PLP
HOH
 2.867
3.388
 N
N
 O1P
O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 GLY A:82 A:82 11.0 0.147 H -33.3 -72.4 11.0 0.147 0.0 PMP
HOH
 2.730
3.626
 N
N
 O3P
O
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 GLY A:82 A:82 11.0 0.147 H -32.9 -66.5 11.0 0.147 0.0 PLP
 2.637
 N
 O1P
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 GLY A:84 A:82 0.0 0.0 H -45.9 -37.4 0.0 0.0 0.0 HOH
 3.435
 N
 O
GLY C:84 C:82 0.0 0.0 H -42.4 -37.2 0.0 0.0 0.0 HOH
 3.770
 N
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 GLY A:82 A:82 10.0 0.133 H -48.5 -51.5 10.0 0.133 0.0 PLP
DIO
HOH
 2.995
9.010
3.714
 N
N
N
 O2P
C2
O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 GLY A:84 A:82 2.0 0.027 T -34.0 -59.7 2.0 0.027 0.0 SO4
BME
HOH
 2.906
9.358
3.252
 CA
N
N
 O4
S2
O
GLY B:84 C:82 3.0 0.04 T -29.2 -63.0 3.0 0.04 0.0 SO4
HOH
 3.124
3.344
 CA
N
 O1
O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 GLY A:84 A:82 1.0 0.013 H -58.9 -37.7 1.0 0.013 0.0
GLY B:84 B:82 0.0 0.0 H -57.8 -37.1 0.0 0.0 0.0
GLY C:84 C:82 1.0 0.013 H -58.2 -36.8 NA NA NA
GLY D:84 D:82 1.0 0.013 H -57.1 -37.6 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 GLY A:82 A:82 0.0 0.0 H -51.7 -42.3 0.0 0.0 0.0 AOA
HOH
 9.878
3.635
 CA
N
 O2
O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 GLY A:93 A:82 10.0 0.133 H -62.4 -35.9 10.0 0.133 0.0 PLP
HOH
 2.908
3.070
 N
O
 O3P
O
GLY B:93 B:82 12.0 0.16 H -58.2 -40.8 12.0 0.16 0.0 PLP
HOH
 2.908
3.079
 N
O
 O1P
O
GLY C:93 E:82 12.0 0.16 H -55.3 -42.0 NA NA NA
GLY D:93 G:82 12.0 0.16 H -50.0 -45.8 NA NA NA
GLY E:93 M:82 11.0 0.147 H -58.1 -39.7 NA NA NA
GLY F:93 N:82 13.0 0.173 H -62.6 -34.8 NA NA NA
GLY G:93 S:82 13.0 0.173 H -56.3 -40.0 NA NA NA
GLY H:93 T:82 12.0 0.16 H -57.4 -40.2 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 GLY A:84 A:82 1.0 0.013 T -33.7 -61.7 1.0 0.013 0.0 SO4
BME
HOH
 2.585
8.800
9.552
 N
CA
O
 O1
S2
O
GLY B:84 C:82 1.0 0.013 T -33.1 -67.4 1.0 0.013 0.0 SO4
HOH
 2.976
7.279
 N
C
 O1
O
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 GLY A:82 A:82 11.0 0.147 H -50.5 -51.1 11.0 0.147 0.0 PLP
GOL
HOH
 2.819
8.329
3.559
 N
N
N
 O3P
O1
O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 GLY A:82 A:82 7.0 0.093 H -41.6 -62.7 7.0 0.093 0.0 PLP
HOH
 2.839
3.430
 N
N
 O2P
O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 GLY A:77 A:82 10.0 0.133 H -46.2 -46.5 10.0 0.133 0.0 PLP
HOH
 2.321
2.916
 H
H
 O3P
O
GLY B:77 B:82 11.0 0.147 H -55.2 -40.3 11.0 0.147 0.0 PLP
HOH
 2.250
2.817
 H
H
 O1P
O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 GLY A:77 A:82 10.0 0.133 H -46.3 -48.4 10.0 0.133 0.0 PLR
HOH
 2.234
3.068
 H
H
 O3P
O
GLY B:77 B:82 11.0 0.147 H -52.1 -39.7 11.0 0.147 0.0 PLR
HOH
 2.189
2.824
 H
H
 O1P
O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 GLY A:82 A:82 10.0 0.133 H -52.4 -43.2 10.0 0.133 0.0 PLP
HOH
 2.915
3.769
 N
N
 O3P
O
GLY B:82 B:82 11.0 0.147 H -53.3 -40.7 11.0 0.147 0.0 PLP
HOH
 3.091
3.750
 N
N
 O1P
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 GLY A:82 A:82 7.0 0.093 H -52.3 -35.3