Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241808675 . C A CCDS2543.1:NM_000030.2:c.254gCc>gAc_NP_000021.1:p.85A>D Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 ALA A:85 A:85 0.0 0.0 H -78.1 -40.2 0.0 0.0 0.0 PLP
HOH
 6.849
6.020
 N
N
 O3P
O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 ALA A:85 A:85 0.0 0.0 H -67.5 -43.0 0.0 0.0 0.0 PLP
HOH
 6.658
7.834
 N
N
 O1P
O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 ALA A:85 A:85 0.0 0.0 H -73.3 -46.0 0.0 0.0 0.0 PMP
HOH
 6.572
8.060
 N
N
 O3P
O
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 ALA A:85 A:85 0.0 0.0 H -60.2 -45.5 0.0 0.0 0.0 PLP
 6.784
 N
 O1P
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 ALA A:87 A:85 0.0 0.0 H -62.1 -40.5 0.0 0.0 0.0 HOH
 6.125
 N
 O
ALA C:87 C:85 0.0 0.0 H -52.8 -46.4 0.0 0.0 0.0 HOH
 7.745
 N
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 ALA A:85 A:85 0.0 0.0 H -59.7 -41.1 0.0 0.0 0.0 PLP
HOH
 6.834
7.963
 N
N
 O2P
O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 ALA A:87 A:85 0.0 0.0 H -62.1 -41.0 0.0 0.0 0.0 SO4
HOH
 7.464
6.126
 N
N
 O3
O
ALA B:87 C:85 0.0 0.0 H -63.0 -37.4 0.0 0.0 0.0 SO4
BME
HOH
 7.469
8.280
6.038
 N
CA
N
 O3
C2
O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 ALA A:87 A:85 0.0 0.0 H -60.4 -53.9 0.0 0.0 0.0
ALA B:87 B:85 0.0 0.0 H -59.3 -54.5 0.0 0.0 0.0
ALA C:87 C:85 0.0 0.0 H -59.5 -54.7 NA NA NA
ALA D:87 D:85 0.0 0.0 H -59.4 -55.5 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 ALA A:85 A:85 0.0 0.0 H -70.0 -35.8 0.0 0.0 0.0 HOH
 7.848
 N
 O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 ALA A:96 A:85 0.0 0.0 H -65.8 -45.1 0.0 0.0 0.0 PLP
HOH
 6.916
5.819
 N
C
 O2P
O
ALA B:96 B:85 0.0 0.0 H -64.5 -42.7 0.0 0.0 0.0 PLP
HOH
 6.857
5.837
 N
C
 O3P
O
ALA C:96 E:85 0.0 0.0 H -61.5 -47.1 NA NA NA
ALA D:96 G:85 0.0 0.0 H -64.8 -44.6 NA NA NA
ALA E:96 M:85 0.0 0.0 H -62.2 -41.9 NA NA NA
ALA F:96 N:85 0.0 0.0 H -60.4 -45.0 NA NA NA
ALA G:96 S:85 0.0 0.0 H -62.8 -47.9 NA NA NA
ALA H:96 T:85 0.0 0.0 H -62.9 -44.0 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 ALA A:87 A:85 0.0 0.0 H -68.8 -31.0 0.0 0.0 0.0 SO4
 6.791
 N
 O3
ALA B:87 C:85 0.0 0.0 H -65.9 -34.6 0.0 0.0 0.0 SO4
 7.421
 N
 O2
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 ALA A:85 A:85 0.0 0.0 H -69.9 -38.4 0.0 0.0 0.0 PLP
HOH
 6.749
6.101
 N
N
 O1P
O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 ALA A:85 A:85 0.0 0.0 H -70.0 -34.8 0.0 0.0 0.0 PLP
HOH
 6.795
7.717
 N
CB
 O3P
O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 ALA A:80 A:85 0.0 0.0 H -66.4 -40.2 0.0 0.0 0.0 PLP
HOH
 6.304
6.433
 H
N
 O2P
O
ALA B:80 B:85 0.0 0.0 H -68.6 -39.6 0.0 0.0 0.0 PLP
HOH
 6.260
5.143
 H
HB3
 O3P
O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 ALA A:80 A:85 0.0 0.0 H -67.8 -38.9 0.0 0.0 0.0 PLR
HOH
 6.319
6.362
 H
N
 O2P
O
ALA B:80 B:85 0.0 0.0 H -72.0 -38.1 0.0 0.0 0.0 PLR
HOH
 6.162
5.181
 H
HB3
 O2P
O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 ALA A:85 A:85 0.0 0.0 H -68.3 -38.4 0.0 0.0 0.0 PLP
HOH
 6.993
6.352
 N
N
 O2P
O
ALA B:85 B:85 0.0 0.0 H -68.2 -40.8 0.0 0.0 0.0 PLP
HOH
 6.987
6.258
 N
N
 O3P
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 ALA A:85 A:85 0.0 0.0 H -67.7 -38.9