Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241808686 . G A CCDS2543.1:NM_000030.2:c.265Gcc>Acc_NP_000021.1:p.89A>T Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 ALA A:89 A:89 1.0 0.009 H -66.4 -58.4 1.0 0.009 0.0 HOH
 8.267
 O
 O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 ALA A:89 A:89 1.0 0.009 H -59.9 -57.2 1.0 0.009 0.0
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 ALA A:89 A:89 1.0 0.009 H -59.0 -57.6 1.0 0.009 0.0
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 ALA A:89 A:89 1.0 0.009 H -55.1 -62.9 1.0 0.009 0.0
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 ALA A:91 A:89 0.0 0.0 H -59.2 -45.4 0.0 0.0 0.0 HOH
 8.170
 O
 O
ALA C:91 C:89 0.0 0.0 H -58.9 -50.4 0.0 0.0 0.0 HOH
 8.041
 O
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 ALA A:89 A:89 2.0 0.017 H -68.7 -43.5 2.0 0.017 0.0 HOH
 9.079
 O
 O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 ALA A:91 A:89 1.0 0.009 H -61.3 -47.6 1.0 0.009 0.0 HOH
 8.107
 O
 O
ALA B:91 C:89 0.0 0.0 H -57.2 -49.3 0.0 0.0 0.0 HOH
 8.102
 O
 O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 ALA A:91 A:89 0.0 0.0 H -53.2 -58.8 0.0 0.0 0.0
ALA B:91 B:89 0.0 0.0 H -54.9 -56.7 0.0 0.0 0.0
ALA C:91 C:89 0.0 0.0 H -52.5 -57.8 NA NA NA
ALA D:91 D:89 0.0 0.0 H -53.4 -58.8 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 ALA A:89 A:89 1.0 0.009 H -73.6 -51.6 1.0 0.009 0.0 HOH
 8.182
 O
 O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 ALA A:100 A:89 1.0 0.009 H -55.6 -54.5 1.0 0.009 0.0 HOH
 7.925
 O
 O
ALA B:100 B:89 1.0 0.009 H -52.5 -54.4 1.0 0.009 0.0 HOH
 7.978
 O
 O
ALA C:100 E:89 1.0 0.009 H -57.2 -51.7 NA NA NA
ALA D:100 G:89 0.0 0.0 H -55.1 -52.2 NA NA NA
ALA E:100 M:89 0.0 0.0 H -66.5 -49.3 NA NA NA
ALA F:100 N:89 1.0 0.009 H -56.4 -52.6 NA NA NA
ALA G:100 S:89 0.0 0.0 H -60.6 -53.2 NA NA NA
ALA H:100 T:89 1.0 0.009 H -57.5 -56.9 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 ALA A:91 A:89 0.0 0.0 H -64.6 -43.4 0.0 0.0 0.0
ALA B:91 C:89 1.0 0.009 H -53.0 -46.0 1.0 0.009 0.0
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 ALA A:89 A:89 0.0 0.0 H -64.6 -47.4 0.0 0.0 0.0 HOH
 8.602
 N
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 ALA A:89 A:89 1.0 0.009 H -55.0 -56.0 1.0 0.009 0.0 HOH
 8.103
 O
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 ALA A:84 A:89 1.0 0.009 H -61.2 -47.6 1.0 0.009 0.0 HOH
 7.811
 O
 O
ALA B:84 B:89 0.0 0.0 H -56.3 -49.3 0.0 0.0 0.0 HOH
 7.754
 HB3
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 ALA A:84 A:89 1.0 0.009 H -66.6 -43.3 1.0 0.009 0.0 HOH
 7.797
 O
 O
ALA B:84 B:89 0.0 0.0 H -56.8 -51.7 0.0 0.0 0.0 HOH
 7.738
 HB3
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 ALA A:89 A:89 0.0 0.0 H -62.2 -49.6 0.0 0.0 0.0 HOH
 7.909
 O
 O
ALA B:89 B:89 0.0 0.0 H -61.9 -47.1 0.0 0.0 0.0 HOH
 7.883
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 ALA A:89 A:89 1.0 0.009 H -61.3 -52.1