Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241808713 . G A CCDS2543.1:NM_000030.2:c.292Gac>Aac_NP_000021.1:p.98D>N Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 ASP A:98 A:98 40.0 0.267 -125.1 -13.8 40.0 0.267 0.0 HOH
 2.560
 OD1
 O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 ASP A:98 A:98 34.0 0.227 -66.6 157.6 34.0 0.227 0.0
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 ASP A:98 A:98 35.0 0.233 -44.7 151.9 35.0 0.233 0.0
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 ASP A:98 A:98 42.0 0.28 E -36.0 150.7 42.0 0.28 0.0
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 ASP A:100 A:98 26.0 0.173 -70.3 137.2 26.0 0.173 0.0 HOH
 2.592
 OD1
 O
ASP C:100 C:98 30.0 0.2 -65.4 137.8 30.0 0.2 0.0 HOH
 3.937
 CA
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 ASP A:98 A:98 37.0 0.247 -38.7 151.8 37.0 0.247 0.0 HOH
 5.612
 O
 O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 ASP A:100 A:98 30.0 0.2 -66.2 136.9 30.0 0.2 0.0 HOH
 2.585
 OD1
 O
ASP B:100 C:98 29.0 0.193 -67.4 134.7 29.0 0.193 0.0 BME
HOH
 7.773
2.707
 OD1
OD1
 C1
O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 ASP A:100 A:98 28.0 0.187 -71.1 140.3 28.0 0.187 0.0
ASP B:100 B:98 26.0 0.173 -71.1 140.5 26.0 0.173 0.0
ASP C:100 C:98 28.0 0.187 -70.3 141.4 NA NA NA
ASP D:100 D:98 27.0 0.18 -70.7 140.9 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 ASP A:98 A:98 38.0 0.253 -77.2 6.4 38.0 0.253 0.0 HOH
 6.315
 OD2
 O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 ASP A:109 A:98 28.0 0.187 -64.4 140.1 28.0 0.187 0.0 HOH
 2.794
 OD1
 O
ASP B:109 B:98 29.0 0.193 -65.9 137.3 29.0 0.193 0.0 HOH
 2.706
 OD1
 O
ASP C:109 E:98 31.0 0.207 -62.9 141.4 NA NA NA
ASP D:109 G:98 30.0 0.2 -70.0 138.9 NA NA NA
ASP E:109 M:98 29.0 0.193 -69.0 138.2 NA NA NA
ASP F:109 N:98 29.0 0.193 -64.1 139.5 NA NA NA
ASP G:109 S:98 29.0 0.193 -65.9 142.1 NA NA NA
ASP H:109 T:98 28.0 0.187 -70.1 140.7 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 ASP A:100 A:98 29.0 0.193 -59.0 138.6 29.0 0.193 0.0
ASP B:100 C:98 29.0 0.193 -65.7 131.9 29.0 0.193 0.0 HOH
 3.444
 CA
 O
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 ASP A:98 A:98 34.0 0.227 -50.9 152.9 34.0 0.227 0.0 HOH
 7.183
 OD2
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 ASP A:98 A:98 36.0 0.24 -64.1 143.4 36.0 0.24 0.0 HOH
 2.860
 OD1
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 ASP A:93 A:98 30.0 0.2 -67.1 134.0 30.0 0.2 0.0 HOH
 2.638
 OD1
 O
ASP B:93 B:98 28.0 0.187 -65.0 138.2 28.0 0.187 0.0 HOH
 2.639
 OD1
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 ASP A:93 A:98 29.0 0.193 -64.6 132.6 29.0 0.193 0.0 HOH
 2.501
 OD1
 O
ASP B:93 B:98 27.0 0.18 -66.0 140.5 27.0 0.18 0.0 HOH
 2.590
 OD1
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 ASP A:98 A:98 34.0 0.227 -64.0 141.4 34.0 0.227 0.0 HOH
 2.819
 OD1
 O
ASP B:98 B:98 32.0 0.213 -57.6 135.0 32.0 0.213 0.0 HOH
 2.785
 OD1
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 ASP A:98 A:98 33.0 0.22 -59.7 139.3