Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241808723 . T A CCDS2543.1:NM_000030.2:c.302cTg>cAg_NP_000021.1:p.101L>Q Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 LEU A:101 A:101 2.0 0.012 E -94.6 128.9 2.0 0.012 0.0 HOH
 7.149
 CD1
 O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 LEU A:101 A:101 4.0 NA E -98.3 132.7 4.0 NA NA
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 LEU A:101 A:101 4.0 0.024 E -104.7 123.0 4.0 0.024 0.0 HOH
 6.823
 O
 O
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 LEU A:101 A:101 18.0 NA E -98.9 119.9 18.0 NA NA
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 LEU A:103 A:101 0.0 0.0 E -97.7 130.0 0.0 0.0 0.0 HOH
 6.467
 CD1
 O
LEU C:103 C:101 0.0 0.0 E -93.9 121.5 0.0 0.0 0.0 HOH
 6.742
 CD1
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 LEU A:101 A:101 11.0 NA E -98.0 125.2 11.0 NA NA HOH
 2.870
 CB
 O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 LEU A:103 A:101 0.0 0.0 E -100.7 134.8 0.0 0.0 0.0 BME
HOH
 8.027
6.812
 CD1
CD1
 S2
O
LEU B:103 C:101 1.0 0.006 E -100.2 136.7 1.0 0.006 0.0 BME
HOH
 9.776
6.047
 N
CD1
 C1
O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 LEU A:103 A:101 0.0 0.0 E -99.2 139.4 0.0 0.0 0.0
LEU B:103 B:101 0.0 0.0 E -98.9 137.1 0.0 0.0 0.0
LEU C:103 C:101 0.0 0.0 E -99.4 138.8 NA NA NA
LEU D:103 D:101 0.0 0.0 E -98.9 137.7 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 LEU A:101 A:101 1.0 0.006 E -94.0 124.1 1.0 0.006 0.0 HOH
 6.530
 CD1
 O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 LEU A:112 A:101 0.0 0.0 E -99.1 135.2 0.0 0.0 0.0 HOH
 6.604
 CD1
 O
LEU B:112 B:101 1.0 0.006 E -97.9 139.3 1.0 0.006 0.0 HOH
 5.728
 CD1
 O
LEU C:112 E:101 0.0 0.0 E -97.8 139.4 NA NA NA
LEU D:112 G:101 0.0 0.0 E -98.3 137.4 NA NA NA
LEU E:112 M:101 1.0 0.006 E -96.1 141.1 NA NA NA
LEU F:112 N:101 0.0 0.0 E -99.7 137.2 NA NA NA
LEU G:112 S:101 0.0 0.0 E -99.4 140.7 NA NA NA
LEU H:112 T:101 0.0 0.0 E -100.4 138.5 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 LEU A:103 A:101 1.0 0.006 E -93.4 132.8 1.0 0.006 0.0
LEU B:103 C:101 0.0 0.0 E -98.2 126.4 0.0 0.0 0.0 HOH
 9.474
 N
 O
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 LEU A:101 A:101 1.0 0.006 E -112.9 120.6 1.0 0.006 0.0 HOH
 7.128
 N
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 LEU A:101 A:101 1.0 0.006 E -97.7 124.8 1.0 0.006 0.0 HOH
 7.910
 O
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 LEU A:96 A:101 0.0 0.0 E -93.6 127.5 0.0 0.0 0.0 HOH
 5.193
 HD12
 O
LEU B:96 B:101 0.0 0.0 E -97.9 131.4 0.0 0.0 0.0 HOH
 4.726
 HD12
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 LEU A:96 A:101 0.0 0.0 E -92.7 129.5 0.0 0.0 0.0 HOH
 5.282
 HD11
 O
LEU B:96 B:101 0.0 0.0 E -98.6 130.9 0.0 0.0 0.0 HOH
 4.458
 HD12
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 LEU A:101 A:101 0.0 0.0 E -92.2 133.1 0.0 0.0 0.0 HOH
 5.916
 CD1
 O
LEU B:101 B:101 1.0 0.006 E -93.9 132.5 1.0 0.006 0.0 HOH
 6.702
 CD1
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 LEU A:101 A:101 0.0 0.0 E -95.7 135.6