Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241808726 . T A CCDS2543.1:NM_000030.2:c.305gTt>gAt_NP_000021.1:p.102V>D Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 VAL A:102 A:102 0.0 0.0 E -121.3 121.7 0.0 0.0 0.0 HOH
 5.395
 C
 O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 VAL A:102 A:102 0.0 0.0 E -136.0 121.3 0.0 0.0 0.0 HOH
 8.119
 CG2
 O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 VAL A:102 A:102 0.0 0.0 E -124.9 117.2 0.0 0.0 0.0 HOH
 4.932
 C
 O
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 VAL A:102 A:102 11.0 0.071 E -119.0 127.5 11.0 0.071 0.0
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 VAL A:104 A:102 0.0 0.0 E -126.9 127.1 0.0 0.0 0.0 HOH
 5.619
 C
 O
VAL C:104 C:102 0.0 0.0 E -120.1 133.7 0.0 0.0 0.0 HOH
 5.477
 C
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 VAL A:102 A:102 2.0 0.013 E -130.1 129.0 2.0 0.013 0.0 HOH
 3.477
 N
 O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 VAL A:104 A:102 0.0 0.0 E -132.6 128.9 0.0 0.0 0.0 BME
HOH
 7.133
5.579
 O
C
 S2
O
VAL B:104 C:102 0.0 0.0 E -132.9 128.9 0.0 0.0 0.0 HOH
 5.698
 C
 O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 VAL A:104 A:102 0.0 0.0 E -135.5 134.7 0.0 0.0 0.0
VAL B:104 B:102 0.0 0.0 E -135.5 133.1 0.0 0.0 0.0
VAL C:104 C:102 0.0 0.0 E -136.8 133.8 NA NA NA
VAL D:104 D:102 0.0 0.0 E -136.3 133.9 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 VAL A:102 A:102 0.0 0.0 E -122.5 135.0 0.0 0.0 0.0 GOL
HOH
 9.893
5.816
 CG1
C
 O3
O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 VAL A:113 A:102 0.0 0.0 E -133.2 133.1 0.0 0.0 0.0 HOH
 5.717
 C
 O
VAL B:113 B:102 0.0 0.0 E -134.9 129.9 0.0 0.0 0.0 HOH
 5.704
 C
 O
VAL C:113 E:102 0.0 0.0 E -137.6 128.7 NA NA NA
VAL D:113 G:102 0.0 0.0 E -136.1 125.0 NA NA NA
VAL E:113 M:102 0.0 0.0 E -138.4 131.3 NA NA NA
VAL F:113 N:102 0.0 0.0 E -136.1 125.6 NA NA NA
VAL G:113 S:102 0.0 0.0 E -139.2 128.3 NA NA NA
VAL H:113 T:102 0.0 0.0 E -136.5 131.2 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 VAL A:104 A:102 0.0 0.0 E -132.2 129.2 0.0 0.0 0.0 HOH
 6.534
 CG1
 O
VAL B:104 C:102 0.0 0.0 E -123.4 127.3 0.0 0.0 0.0 HOH
 6.685
 CG1
 O
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 VAL A:102 A:102 0.0 0.0 E -118.6 124.2 0.0 0.0 0.0 HOH
 6.434
 CG1
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 VAL A:102 A:102 0.0 0.0 E -120.8 118.9 0.0 0.0 0.0 HOH
 5.935
 C
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 VAL A:97 A:102 0.0 0.0 E -122.4 130.0 0.0 0.0 0.0 HOH
 5.551
 C
 O
VAL B:97 B:102 0.0 0.0 E -130.6 122.3 0.0 0.0 0.0 HOH
 5.614
 C
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 VAL A:97 A:102 0.0 0.0 E -125.0 130.5 0.0 0.0 0.0 HOH
 5.630
 HG12
 O
VAL B:97 B:102 0.0 0.0 E -131.9 120.8 0.0 0.0 0.0 HOH
 5.544
 C
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 VAL A:102 A:102 0.0 0.0 E -131.7 127.6 0.0 0.0 0.0 HOH
 5.528
 C
 O
VAL B:102 B:102 0.0 0.0 E -130.3 130.6 0.0 0.0 0.0 HOH
 5.657
 C
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 VAL A:102 A:102 0.0 0.0 E -132.7 124.6