Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241808728 . G A CCDS2543.1:NM_000030.2:c.307Ggg>Agg_NP_000021.1:p.103G>R Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 GLY A:103 A:103 0.0 0.0 -71.5 82.2 0.0 0.0 0.0 HOH
 2.328
 O
 O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 GLY A:103 A:103 1.0 0.013 -69.4 84.1 1.0 0.013 0.0 HOH
 9.975
 C
 O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 GLY A:103 A:103 0.0 0.0 -76.2 85.8 0.0 0.0 0.0 HOH
 2.734
 O
 O
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 GLY A:103 A:103 15.0 0.2 -82.8 85.4 15.0 0.2 0.0
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 GLY A:105 A:103 0.0 0.0 E -76.8 84.4 0.0 0.0 0.0 HOH
 2.784
 O
 O
GLY C:105 C:103 0.0 0.0 E -82.5 87.3 0.0 0.0 0.0 HOH
 2.664
 O
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 GLY A:103 A:103 3.0 0.04 E -81.2 83.5 3.0 0.04 0.0 HOH
 3.735
 O
 O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 GLY A:105 A:103 0.0 0.0 E -80.5 87.5 0.0 0.0 0.0 BME
HOH
 8.706
2.910
 CA
O
 S2
O
GLY B:105 C:103 0.0 0.0 E -78.0 90.3 0.0 0.0 0.0 HOH
 2.746
 O
 O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 GLY A:105 A:103 0.0 0.0 E -91.9 76.9 0.0 0.0 0.0
GLY B:105 B:103 0.0 0.0 E -92.1 79.0 0.0 0.0 0.0
GLY C:105 C:103 0.0 0.0 E -92.5 78.3 NA NA NA
GLY D:105 D:103 0.0 0.0 E -93.2 77.8 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 GLY A:103 A:103 0.0 0.0 -92.4 88.4 0.0 0.0 0.0 HOH
 2.690
 O
 O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 GLY A:114 A:103 0.0 0.0 E -81.0 86.6 0.0 0.0 0.0 HOH
 2.959
 O
 O
GLY B:114 B:103 0.0 0.0 E -81.4 90.9 0.0 0.0 0.0 HOH
 2.919
 O
 O
GLY C:114 E:103 0.0 0.0 E -74.2 86.7 NA NA NA
GLY D:114 G:103 0.0 0.0 E -74.3 90.5 NA NA NA
GLY E:114 M:103 0.0 0.0 E -81.7 87.9 NA NA NA
GLY F:114 N:103 0.0 0.0 E -78.6 91.0 NA NA NA
GLY G:114 S:103 0.0 0.0 E -79.4 90.4 NA NA NA
GLY H:114 T:103 0.0 0.0 E -82.1 92.2 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 GLY A:105 A:103 0.0 0.0 E -87.9 74.9 0.0 0.0 0.0 HOH
 3.613
 O
 O
GLY B:105 C:103 0.0 0.0 E -84.5 74.3 0.0 0.0 0.0 HOH
 3.641
 O
 O
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 GLY A:103 A:103 0.0 0.0 -74.1 85.6 0.0 0.0 0.0 HOH
 4.063
 O
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 GLY A:103 A:103 0.0 0.0 E -75.4 92.4 0.0 0.0 0.0 PLP
HOH
 9.979
2.915
 O
O
 C2A
O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 GLY A:98 A:103 0.0 0.0 E -76.9 85.1 0.0 0.0 0.0 PLP
HOH
 9.604
2.653
 O
HA3
 H2A3
O
GLY B:98 B:103 0.0 0.0 E -69.6 84.9 0.0 0.0 0.0 PLP
HOH
 9.555
2.729
 O
HA3
 H2A3
O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 GLY A:98 A:103 0.0 0.0 E -73.5 84.6 0.0 0.0 0.0 PLR
HOH
 9.625
2.695
 O
HA3
 H2A3
O
GLY B:98 B:103 0.0 0.0 E -68.1 84.1 0.0 0.0 0.0 PLR
HOH
 9.607
2.694
 O
O
 H2A3
O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 GLY A:103 A:103 0.0 0.0 E -79.5 88.8 0.0 0.0 0.0 HOH
 2.672
 O
 O
GLY B:103 B:103 0.0 0.0 E -79.9 89.5 0.0 0.0 0.0 HOH
 2.929
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 GLY A:103 A:103 0.0 0.0 E -70.9 93.5