Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr2 | 241808745 | . | G | A | CCDS2543.1:NM_000030.2:c.324tgG>tgA_NP_000021.1:p.108W>* | Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
1h0c | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2003-06-12 | TRP | A:108 | A:108 | 37.0 | 0.145 | H | -66.8 | -38.9 | 22.0 | 0.086 | 0.059 |
A:P21549:0.059 |
PLP AOA GOL HOH |
3.336 4.229 5.744 6.546 |
CH2 CZ2 N CD1 |
C5 O2 O3 O |
|
5og0 | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2017-09-27 | TRP | A:108 | A:108 | 38.0 | 0.149 | H | -67.7 | -36.4 | 18.0 | 0.071 | 0.078 |
A:P21549:0.078 |
PLP HOH |
3.161 4.713 |
CH2 CZ2 |
C5 O |
|
6rv0 | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2020-04-08 | TRP | A:108 | A:108 | 48.0 | 0.188 | H | -61.1 | -45.2 | 30.0 | 0.118 | 0.07 |
A:P21549:0.071 |
PMP HOH |
2.993 6.271 |
CD2 CD1 |
N1 O |
|
6rv1 | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2020-04-08 | TRP | A:108 | A:108 | 70.0 | 0.275 | 360.0 | -52.4 | 50.0 | 0.196 | 0.079 |
A:P21549:0.078 |
PLP |
3.103 |
NE1 |
C2A |
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3r9a | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2011-05-11 | TRP | A:110 | A:108 | 11.0 | 0.043 | H | -67.4 | -42.9 | 1.0 | 0.004 | 0.039 |
C:P21549:0.039 |
HOH |
3.852 |
CZ3 |
O |
|
TRP | C:110 | C:108 | 14.0 | 0.055 | H | -76.1 | -40.7 | 5.0 | 0.02 | 0.035 |
A:P21549:0.035 |
HOH |
3.529 |
CZ2 |
O |
||||||||
5ofy | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2017-09-27 | TRP | A:108 | A:108 | 46.0 | 0.18 | H | -75.0 | -26.2 | 29.0 | 0.114 | 0.066 |
A:P21549:0.067 |
PLP DIO HOH |
3.226 4.207 3.830 |
CZ3 CZ2 CB |
C6 O1' O |
|
4kyo | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2014-11-19 | TRP | A:110 | A:108 | 25.0 | 0.098 | H | -65.7 | -44.5 | 6.0 | 0.024 | 0.074 |
B:P21549:0.075 |
SO4 HOH |
4.636 3.207 |
CH2 NE1 |
O3 O |
|
TRP | B:110 | C:108 | 26.0 | 0.102 | H | -70.0 | -43.3 | 7.0 | 0.027 | 0.075 |
A:P21549:0.075 |
SO4 BME HOH |
4.607 9.006 3.280 |
CZ3 CZ2 NE1 |
O3 O1 O |
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4i8a | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2013-05-01 | TRP | A:110 | A:108 | 13.0 | 0.051 | H | -59.3 | -39.3 | 5.0 | 0.02 | 0.031 |
B:P21549:0.031 |
GOL GOL |
4.367 7.611 |
CH2 N |
C1 C2 |
|
TRP | B:110 | B:108 | 13.0 | 0.051 | H | -59.1 | -39.7 | 5.0 | 0.02 | 0.031 |
A:P21549:0.031 |
GOL |
5.027 |
CH2 |
C2 |
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TRP | C:110 | C:108 | 12.0 | 0.047 | H | -59.8 | -39.5 | NA | NA | NA | |||||||||||||
TRP | D:110 | D:108 | 12.0 | 0.047 | H | -60.7 | -38.5 | NA | NA | NA | |||||||||||||
1j04 | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2003-11-11 | TRP | A:108 | A:108 | 15.0 | 0.059 | H | -64.4 | -49.7 | 15.0 | 0.059 | 0.0 |
AOA GOL HOH |
4.109 5.880 6.324 |
CZ2 N CD1 |
O2 O3 O |
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5luc | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2017-09-20 | TRP | A:119 | A:108 | 43.0 | 0.169 | H | -71.1 | -43.4 | 25.0 | 0.098 | 0.071 |
B:P21549:0.071 |
PLP HOH |
3.291 3.074 |
CZ3 O |
C6 O |
|
TRP | B:119 | B:108 | 47.0 | 0.184 | H | -71.0 | -40.0 | 29.0 | 0.114 | 0.07 |
A:P21549:0.071 |
PLP HOH |
3.325 3.118 |
CD2 O |
N1 O |
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TRP | C:119 | E:108 | 44.0 | 0.173 | H | -71.2 | -40.9 | NA | NA | NA | |||||||||||||
TRP | D:119 | G:108 | 45.0 | 0.176 | H | -69.1 | -44.0 | NA | NA | NA | |||||||||||||
TRP | E:119 | M:108 | 43.0 | 0.169 | H | -66.9 | -43.0 | NA | NA | NA | |||||||||||||
TRP | F:119 | N:108 | 43.0 | 0.169 | H | -75.5 | -40.2 | NA | NA | NA | |||||||||||||
TRP | G:119 | S:108 | 46.0 | 0.18 | H | -72.8 | -46.2 | NA | NA | NA | |||||||||||||
TRP | H:119 | T:108 | 47.0 | 0.184 | H | -67.9 | -42.5 | NA | NA | NA | |||||||||||||
4kxk | 1 | P21549 | 99.49 | 0.0 |
X-RAY |
2014-11-19 | TRP | A:110 | A:108 | 21.0 | 0.082 | H | -77.4 | -33.6 | 3.0 | 0.012 | 0.07 |
B:P21549:0.071 |
SO4 BME HOH |
5.120 3.865 3.683 |
CH2 CZ2 N |
O4 C1 O |
|
TRP | B:110 | C:108 | 22.0 | 0.086 | H | -72.3 | -32.4 | 4.0 | 0.016 | 0.07 |
A:P21549:0.071 |
SO4 HOH |
4.767 3.361 |
CH2 NE1 |
O4 O |
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4cbr | 1 | P21549 | 99.23 | 0.0 |
X-RAY |
2014-07-09 | TRP | A:108 | A:108 | 43.0 | 0.169 | H | -67.9 | -44.6 | 26.0 | 0.102 | 0.067 |
A:P21549:0.067 |
PLP GOL HOH |
3.238 4.261 2.982 |
NE1 CZ2 CB |
C2A O2 O |
|
4cbs | 1 | P21549 | 98.72 | 0.0 |
X-RAY |
2014-07-09 | TRP | A:108 | A:108 | 35.0 | 0.137 | H | -68.0 | -43.0 | 21.0 | 0.082 | 0.055 |
A:P21549:0.055 |
PLP HOH |
3.217 3.416 |
NE1 CB |
C2A O |
|
5f9s | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2016-12-21 | TRP | A:103 | A:108 | 36.0 | 0.141 | H | -69.1 | -41.6 | 20.0 | 0.078 | 0.063 |
B:P21549:0.063 |
PLP HOH |
2.630 2.923 |
HH2 HZ2 |
H5A1 O |
|
TRP | B:103 | B:108 | 36.0 | 0.141 | H | -74.9 | -47.9 | 19.0 | 0.075 | 0.066 |
A:P21549:0.067 |
PLP HOH |
2.543 2.758 |
HH2 HB2 |
H5A1 O |
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5hhy | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2017-01-25 | TRP | A:103 | A:108 | 40.0 | 0.157 | H | -69.8 | -41.8 | 23.0 | 0.09 | 0.067 |
B:P21549:0.067 |
PLR HOH |
2.733 2.908 |
HH2 HB2 |
H5A1 O |
|
TRP | B:103 | B:108 | 41.0 | 0.161 | H | -73.5 | -47.0 | 23.0 | 0.09 | 0.071 |
A:P21549:0.071 |
PLR HOH |
2.462 2.800 |
HH2 HB2 |
H5A1 O |
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2yob | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2013-10-30 | TRP | A:108 | A:108 | 35.0 | 0.137 | H | -71.8 | -42.4 | 20.0 | 0.078 | 0.059 |
B:P21549:0.059 |
PLP HOH |
3.286 3.761 |
CH2 N |
C5 O |
|
TRP | B:108 | B:108 | 38.0 | 0.149 | H | -67.5 | -40.4 | 22.0 | 0.086 | 0.063 |
A:P21549:0.063 |
PLP HOH |
3.251 3.771 |
CD2 CZ2 |
N1 O |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-p21549-f1 | 1 | P21549 | 100.0 | 0.0 | TRP | A:108 | A:108 | 43.0 | 0.169 | H | -71.5 | -38.2 |