Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241808747 . G A CCDS2543.1:NM_000030.2:c.326gGg>gAg_NP_000021.1:p.109G>E Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 GLY A:109 A:109 0.0 0.0 H -68.9 -41.1 0.0 0.0 0.0 PLP
GOL
HOH
 8.026
6.653
5.594
 N
C
CA
 N1
O3
O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 GLY A:109 A:109 0.0 0.0 H -60.8 -52.3 0.0 0.0 0.0 PLP
HOH
 7.879
5.273
 N
O
 N1
O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 GLY A:109 A:109 0.0 0.0 H -59.7 -44.3 0.0 0.0 0.0 PMP
HOH
 7.304
5.573
 N
CA
 N1
O
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 GLY A:109 A:109 0.0 0.0 H -45.8 -57.8 0.0 0.0 0.0 PLP
 7.503
 N
 N1
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 GLY A:111 A:109 0.0 0.0 H -54.1 -47.2 0.0 0.0 0.0 HOH
 3.032
 N
 O
GLY C:111 C:109 0.0 0.0 H -57.2 -46.8 0.0 0.0 0.0 HOH
 3.054
 N
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 GLY A:109 A:109 0.0 0.0 H -72.4 -49.2 0.0 0.0 0.0 PLP
HOH
 7.738
3.354
 N
N
 N1
O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 GLY A:111 A:109 0.0 0.0 H -58.7 -35.0 0.0 0.0 0.0 HOH
 2.999
 N
 O
GLY B:111 C:109 0.0 0.0 H -60.9 -38.6 0.0 0.0 0.0 HOH
 3.065
 N
 O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 GLY A:111 A:109 0.0 0.0 H -54.3 -50.3 0.0 0.0 0.0 GOL
 7.258
 C
 O1
GLY B:111 B:109 0.0 0.0 H -54.3 -48.9 0.0 0.0 0.0
GLY C:111 C:109 0.0 0.0 H -54.2 -49.1 NA NA NA
GLY D:111 D:109 0.0 0.0 H -55.3 -49.0 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 GLY A:109 A:109 0.0 0.0 H -59.2 -35.1 0.0 0.0 0.0 GOL
HOH
 6.262
5.611
 C
CA
 O3
O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 GLY A:120 A:109 0.0 0.0 H -58.8 -39.6 0.0 0.0 0.0 PLP
HOH
 7.658
2.786
 N
N
 N1
O
GLY B:120 B:109 0.0 0.0 H -62.9 -38.1 0.0 0.0 0.0 PLP
HOH
 7.789
2.895
 N
N
 N1
O
GLY C:120 E:109 0.0 0.0 H -60.9 -41.1 NA NA NA
GLY D:120 G:109 0.0 0.0 H -59.5 -39.4 NA NA NA
GLY E:120 M:109 0.0 0.0 H -61.6 -37.3 NA NA NA
GLY F:120 N:109 0.0 0.0 H -62.8 -34.8 NA NA NA
GLY G:120 S:109 0.0 0.0 H -56.7 -37.6 NA NA NA
GLY H:120 T:109 0.0 0.0 H -58.2 -40.9 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 GLY A:111 A:109 0.0 0.0 H -64.2 -46.7 0.0 0.0 0.0 HOH
 2.848
 N
 O
GLY B:111 C:109 0.0 0.0 H -64.1 -42.7 0.0 0.0 0.0 HOH
 3.050
 N
 O
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 GLY A:109 A:109 0.0 0.0 H -62.3 -38.5 0.0 0.0 0.0 PLP
HOH
 7.426
2.449
 N
N
 C2A
O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 GLY A:109 A:109 0.0 0.0 H -68.3 -33.2 0.0 0.0 0.0 PLP
HOH
 7.453
2.893
 N
N
 C2A
O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 GLY A:104 A:109 0.0 0.0 H -62.5 -37.9 0.0 0.0 0.0 PLP
HOH
 6.906
2.061
 H
H
 H2A3
O
GLY B:104 B:109 0.0 0.0 H -53.3 -38.6 0.0 0.0 0.0 PLP
HOH
 6.730
1.996
 H
H
 H2A3
O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 GLY A:104 A:109 0.0 0.0 H -62.7 -38.8 0.0 0.0 0.0 PLR
HOH
 6.959
2.124
 H
H
 H2A3
O
GLY B:104 B:109 0.0 0.0 H -54.1 -39.9 0.0 0.0 0.0 PLR
HOH
 6.802
2.018
 H
H
 H2A3
O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 GLY A:109 A:109 0.0 0.0 H -60.2 -40.3 0.0 0.0 0.0 PLP
HOH
 7.544
3.004
 N
N
 N1
O
GLY B:109 B:109 0.0 0.0 H -65.5 -34.7 0.0 0.0 0.0 PLP
HOH
 7.545
3.040
 N
N
 N1
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 GLY A:109 A:109 0.0 0.0 H -62.4 -40.7