Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr2 | 241808753 | . | G | A | CCDS2543.1:NM_000030.2:c.332cGa>cAa_NP_000021.1:p.111R>Q | Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
1h0c | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2003-06-12 | ARG | A:111 | A:111 | 96.0 | 0.427 | H | -64.0 | -36.6 | 15.0 | 0.067 | 0.36 |
A:P21549:0.36 |
PLP AOA GOL HOH |
6.852 8.247 2.843 4.790 |
NH1 NH1 NE NH2 |
O3P C1 O3 O |
|
5og0 | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2017-09-27 | ARG | A:111 | A:111 | 98.0 | 0.436 | H | -65.8 | -38.5 | 14.0 | 0.062 | 0.374 |
A:P21549:0.373 |
PLP HOH |
7.423 4.355 |
NH1 N |
C5A O |
|
6rv0 | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2020-04-08 | ARG | A:111 | A:111 | 99.0 | 0.44 | H | -67.7 | -53.9 | 22.0 | 0.098 | 0.342 |
A:P21549:0.342 |
PMP HOH |
6.790 9.908 |
NH1 N |
O1P O |
|
6rv1 | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2020-04-08 | ARG | A:111 | A:111 | 131.0 | 0.582 | H | -77.0 | -53.4 | 48.0 | 0.213 | 0.369 |
A:P21549:0.369 |
PLP |
6.706 |
NH1 |
O3P |
|
3r9a | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2011-05-11 | ARG | A:113 | A:111 | 118.0 | 0.524 | H | -60.8 | -42.2 | 19.0 | 0.084 | 0.44 |
C:P21549:0.44 |
BTB HOH |
7.141 2.915 |
NH2 NH2 |
O8 O |
|
ARG | C:113 | C:111 | 120.0 | 0.533 | H | -59.2 | -45.8 | 17.0 | 0.076 | 0.457 |
A:P21549:0.458 |
HOH |
2.751 |
NE |
O |
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5ofy | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2017-09-27 | ARG | A:111 | A:111 | 101.0 | 0.449 | H | -65.9 | -46.1 | 20.0 | 0.089 | 0.36 |
A:P21549:0.36 |
PLP DIO HOH |
6.728 8.594 7.300 |
NH1 NH1 NH2 |
O1P O1' O |
|
4kyo | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2014-11-19 | ARG | A:113 | A:111 | 122.0 | 0.542 | H | -57.4 | -42.2 | 17.0 | 0.076 | 0.466 |
B:P21549:0.467 |
SO4 BTB HOH |
5.807 6.965 4.156 |
NH1 NH2 NE |
O3 O6 O |
|
ARG | B:113 | C:111 | 125.0 | 0.556 | H | -66.7 | -38.7 | 21.0 | 0.093 | 0.463 |
A:P21549:0.462 |
SO4 BTB BME HOH |
6.041 7.872 9.518 2.817 |
NH1 NH2 NH2 NH1 |
O3 C7 O1 O |
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4i8a | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2013-05-01 | ARG | A:113 | A:111 | 99.0 | 0.44 | H | -63.5 | -47.4 | 21.0 | 0.093 | 0.347 |
B:P21549:0.347 |
GOL GOL |
7.998 3.543 |
NH1 NH2 |
C1 O3 |
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ARG | B:113 | B:111 | 101.0 | 0.449 | H | -62.3 | -46.9 | 19.0 | 0.084 | 0.365 |
A:P21549:0.364 |
GOL |
8.664 |
NH1 |
C2 |
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ARG | C:113 | C:111 | 102.0 | 0.453 | H | -63.1 | -45.6 | NA | NA | NA | |||||||||||||
ARG | D:113 | D:111 | 99.0 | 0.44 | H | -62.1 | -46.4 | NA | NA | NA | |||||||||||||
1j04 | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2003-11-11 | ARG | A:111 | A:111 | 99.0 | 0.44 | H | -67.8 | -40.3 | 99.0 | 0.44 | 0.0 |
AOA GOL HOH |
9.036 3.092 6.341 |
NH1 NE N |
O1 O2 O |
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5luc | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2017-09-20 | ARG | A:122 | A:111 | 104.0 | 0.462 | H | -60.1 | -40.4 | 18.0 | 0.08 | 0.382 |
B:P21549:0.382 |
PLP BTB HOH |
7.089 7.271 2.957 |
NH1 NH2 NE |
O2P C7 O |
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ARG | B:122 | B:111 | 104.0 | 0.462 | H | -63.9 | -38.9 | 20.0 | 0.089 | 0.373 |
A:P21549:0.373 |
BTB PLP HOH |
7.414 6.984 3.039 |
NH2 NH1 NE |
C7 O3P O |
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ARG | C:122 | E:111 | 106.0 | 0.471 | H | -67.7 | -38.0 | NA | NA | NA | |||||||||||||
ARG | D:122 | G:111 | 103.0 | 0.458 | H | -68.7 | -35.9 | NA | NA | NA | |||||||||||||
ARG | E:122 | M:111 | 104.0 | 0.462 | H | -66.3 | -41.4 | NA | NA | NA | |||||||||||||
ARG | F:122 | N:111 | 100.0 | 0.444 | H | -62.8 | -39.9 | NA | NA | NA | |||||||||||||
ARG | G:122 | S:111 | 105.0 | 0.467 | H | -63.9 | -40.5 | NA | NA | NA | |||||||||||||
ARG | H:122 | T:111 | 104.0 | 0.462 | H | -63.5 | -43.2 | NA | NA | NA | |||||||||||||
4kxk | 1 | P21549 | 99.49 | 0.0 |
X-RAY |
2014-11-19 | ARG | A:113 | A:111 | 124.0 | 0.551 | H | -63.4 | -45.4 | 21.0 | 0.093 | 0.458 |
B:P21549:0.458 |
SO4 BME HOH |
6.332 8.211 6.826 |
NH1 NH1 N |
O2 C2 O |
|
ARG | B:113 | C:111 | 125.0 | 0.556 | H | -59.9 | -44.6 | 21.0 | 0.093 | 0.463 |
A:P21549:0.462 |
SO4 HOH |
6.357 7.202 |
NH1 N |
O2 O |
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4cbr | 1 | P21549 | 99.23 | 0.0 |
X-RAY |
2014-07-09 | ARG | A:111 | A:111 | 95.0 | 0.422 | H | -58.0 | -39.1 | 15.0 | 0.067 | 0.355 |
A:P21549:0.356 |
PLP GOL HOH |
7.149 7.998 2.430 |
NH1 NH2 NH2 |
O1P C3 O |
|
4cbs | 1 | P21549 | 98.72 | 0.0 |
X-RAY |
2014-07-09 | ARG | A:111 | A:111 | 93.0 | 0.413 | H | -66.0 | -40.0 | 15.0 | 0.067 | 0.346 |
A:P21549:0.347 |
PLP HOH |
7.064 6.880 |
NH1 N |
O4P O |
|
5f9s | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2016-12-21 | ARG | A:106 | A:111 | 97.0 | 0.431 | H | -67.0 | -38.4 | 17.0 | 0.076 | 0.355 |
B:P21549:0.356 |
PLP HOH |
5.887 2.024 |
HG3 HE |
H6 O |
|
ARG | B:106 | B:111 | 100.0 | 0.444 | H | -66.9 | -37.0 | 19.0 | 0.084 | 0.36 |
A:P21549:0.36 |
PLP HOH |
5.886 1.799 |
HG3 HE |
H5A2 O |
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5hhy | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2017-01-25 | ARG | A:106 | A:111 | 98.0 | 0.436 | H | -68.5 | -38.9 | 18.0 | 0.08 | 0.356 |
B:P21549:0.356 |
PLR HOH |
5.787 1.974 |
HG3 HE |
H5A1 O |
|
ARG | B:106 | B:111 | 98.0 | 0.436 | H | -67.6 | -37.1 | 19.0 | 0.084 | 0.352 |
A:P21549:0.351 |
PLR HOH |
5.710 1.772 |
HG3 HE |
H5A2 O |
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2yob | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2013-10-30 | ARG | A:111 | A:111 | 97.0 | 0.431 | H | -64.8 | -36.7 | 13.0 | 0.058 | 0.373 |
B:P21549:0.373 |
PLP BTB GOL HOH |
6.850 7.380 8.437 2.972 |
NH1 NH2 NE NH2 |
O2P O1 O3 O |
|
ARG | B:111 | B:111 | 101.0 | 0.449 | H | -70.0 | -37.5 | 14.0 | 0.062 | 0.387 |
A:P21549:0.387 |
BTB PLP HOH |
7.052 6.976 2.864 |
NH2 NH1 NE |
O1 O3P O |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-p21549-f1 | 1 | P21549 | 100.0 | 0.0 | ARG | A:111 | A:111 | 103.0 | 0.458 | H | -68.0 | -39.2 |