Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241808756 . C A CCDS2543.1:NM_000030.2:c.335gCc>gAc_NP_000021.1:p.112A>D Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 ALA A:112 A:112 0.0 0.0 H -65.2 -32.1 0.0 0.0 0.0 PLP
GOL
HOH
 9.251
6.995
7.976
 N
N
CB
 C6
O2
O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 ALA A:112 A:112 0.0 0.0 H -61.7 -40.2 0.0 0.0 0.0 PLP
HOH
 9.248
6.195
 N
N
 C6
O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 ALA A:112 A:112 0.0 0.0 H -48.1 -39.4 0.0 0.0 0.0 PMP
HOH
 8.641
7.558
 N
CB
 C6
O
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 ALA A:112 A:112 4.0 0.035 H -46.2 -40.9 4.0 0.035 0.0 PLP
 8.871
 N
 C6
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 ALA A:114 A:112 0.0 0.0 H -62.5 -40.3 0.0 0.0 0.0 HOH
 6.004
 N
 O
ALA C:114 C:112 0.0 0.0 H -56.1 -44.2 0.0 0.0 0.0 HOH
 6.781
 N
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 ALA A:112 A:112 0.0 0.0 H -53.2 -35.6 0.0 0.0 0.0 PLP
HOH
 9.130
7.830
 N
CB
 C6
O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 ALA A:114 A:112 0.0 0.0 H -58.6 -44.3 0.0 0.0 0.0 HOH
 6.168
 C
 O
ALA B:114 C:112 0.0 0.0 H -60.3 -40.8 0.0 0.0 0.0 HOH
 6.127
 N
 O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 ALA A:114 A:112 0.0 0.0 H -50.2 -49.6 0.0 0.0 0.0 GOL
 7.283
 N
 O1
ALA B:114 B:112 0.0 0.0 H -49.5 -50.4 0.0 0.0 0.0
ALA C:114 C:112 0.0 0.0 H -50.5 -50.0 NA NA NA
ALA D:114 D:112 0.0 0.0 H -51.5 -49.4 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 ALA A:112 A:112 0.0 0.0 H -62.5 -41.1 0.0 0.0 0.0 GOL
HOH
 6.423
7.133
 N
C
 C3
O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 ALA A:123 A:112 0.0 0.0 H -61.4 -41.1 0.0 0.0 0.0 PLP
HOH
 9.110
4.645
 N
N
 N1
O
ALA B:123 B:112 0.0 0.0 H -63.3 -38.4 0.0 0.0 0.0 PLP
HOH
 9.163
4.761
 N
N
 N1
O
ALA C:123 E:112 0.0 0.0 H -59.4 -39.0 NA NA NA
ALA D:123 G:112 0.0 0.0 H -63.7 -42.8 NA NA NA
ALA E:123 M:112 0.0 0.0 H -57.6 -43.2 NA NA NA
ALA F:123 N:112 0.0 0.0 H -59.4 -42.3 NA NA NA
ALA G:123 S:112 0.0 0.0 H -60.8 -40.7 NA NA NA
ALA H:123 T:112 0.0 0.0 H -57.2 -39.4 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 ALA A:114 A:112 0.0 0.0 H -62.1 -43.4 0.0 0.0 0.0 HOH
 7.228
 CB
 O
ALA B:114 C:112 0.0 0.0 H -60.9 -53.0 0.0 0.0 0.0 HOH
 7.174
 CB
 O
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 ALA A:112 A:112 0.0 0.0 H -66.2 -25.1 0.0 0.0 0.0 PLP
HOH
 9.165
6.367
 N
CB
 N1
O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 ALA A:112 A:112 0.0 0.0 H -59.3 -40.3 0.0 0.0 0.0 PLP
HOH
 8.775
7.292
 N
CB
 N1
O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 ALA A:107 A:112 0.0 0.0 H -62.2 -38.1 0.0 0.0 0.0 PLP
HOH
 7.921
6.105
 H
N
 H6
O
ALA B:107 B:112 0.0 0.0 H -61.4 -40.7 0.0 0.0 0.0 PLP
HOH
 7.866
6.224
 H
N
 H6
O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 ALA A:107 A:112 0.0 0.0 H -62.0 -40.1 0.0 0.0 0.0 PLR
HOH
 8.013
6.170
 H
N
 H6
O
ALA B:107 B:112 0.0 0.0 H -61.4 -40.4 0.0 0.0 0.0 PLR
HOH
 7.875
6.087
 H
N
 H6
O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 ALA A:112 A:112 0.0 0.0 H -67.7 -36.0 0.0 0.0 0.0 PLP
HOH
 8.934
6.011
 N
N
 C6
O
ALA B:112 B:112 0.0 0.0 H -63.0 -40.2 0.0 0.0 0.0 PLP
HOH
 8.899
6.041
 N
N
 C6
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 ALA A:112 A:112 0.0 0.0 H -62.6 -39.3