Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241808767 . G A CCDS2543.1:NM_000030.2:c.346Ggg>Agg_NP_000021.1:p.116G>R Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 GLY A:116 A:116 0.0 0.0 H -48.0 -49.4 0.0 0.0 0.0 GOL
HOH
 9.872
6.926
 N
O
 O2
O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 GLY A:116 A:116 0.0 0.0 H -53.1 -48.7 0.0 0.0 0.0 HOH
 8.649
 N
 O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 GLY A:116 A:116 2.0 0.027 H -43.9 -52.7 2.0 0.027 0.0
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 GLY A:116 A:116 4.0 0.053 H -47.6 -51.9 4.0 0.053 0.0
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 GLY A:118 A:116 0.0 0.0 H -52.4 -40.5 0.0 0.0 0.0 HOH
 5.399
 O
 O
GLY C:118 C:116 0.0 0.0 H -51.7 -48.1 0.0 0.0 0.0 HOH
 6.016
 C
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 GLY A:116 A:116 0.0 0.0 H -57.9 -51.4 0.0 0.0 0.0 HOH
 5.773
 O
 O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 GLY A:118 A:116 0.0 0.0 H -56.4 -44.0 0.0 0.0 0.0 HOH
 4.398
 O
 O
GLY B:118 C:116 0.0 0.0 H -56.1 -42.2 0.0 0.0 0.0 HOH
 6.108
 O
 O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 GLY A:118 A:116 0.0 0.0 H -60.5 -40.1 0.0 0.0 0.0
GLY B:118 B:116 0.0 0.0 H -59.2 -39.6 0.0 0.0 0.0
GLY C:118 C:116 0.0 0.0 H -60.3 -39.7 NA NA NA
GLY D:118 D:116 0.0 0.0 H -57.5 -40.3 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 GLY A:116 A:116 0.0 0.0 H -54.0 -39.3 0.0 0.0 0.0 GOL
HOH
 9.867
6.412
 N
O
 C3
O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 GLY A:127 A:116 0.0 0.0 H -57.1 -49.5 0.0 0.0 0.0 HOH
 4.235
 O
 O
GLY B:127 B:116 0.0 0.0 H -59.2 -42.8 0.0 0.0 0.0 HOH
 4.210
 O
 O
GLY C:127 E:116 0.0 0.0 H -50.7 -44.4 NA NA NA
GLY D:127 G:116 0.0 0.0 H -58.3 -44.7 NA NA NA
GLY E:127 M:116 0.0 0.0 H -60.8 -45.2 NA NA NA
GLY F:127 N:116 0.0 0.0 H -53.1 -44.2 NA NA NA
GLY G:127 S:116 0.0 0.0 H -53.6 -50.4 NA NA NA
GLY H:127 T:116 0.0 0.0 H -48.8 -49.8 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 GLY A:118 A:116 0.0 0.0 H -57.8 -43.3 0.0 0.0 0.0
GLY B:118 C:116 0.0 0.0 H -55.2 -51.0 0.0 0.0 0.0
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 GLY A:116 A:116 0.0 0.0 H -52.3 -50.9 0.0 0.0 0.0 HOH
 8.353
 N
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 GLY A:116 A:116 0.0 0.0 H -55.2 -48.3 0.0 0.0 0.0 HOH
 6.631
 O
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 GLY A:111 A:116 0.0 0.0 H -57.6 -42.8 0.0 0.0 0.0 HOH
 4.378
 O
 O
GLY B:111 B:116 0.0 0.0 H -52.9 -40.8 0.0 0.0 0.0 HOH
 6.095
 O
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 GLY A:111 A:116 0.0 0.0 H -62.5 -38.1 0.0 0.0 0.0 HOH
 4.399
 O
 O
GLY B:111 B:116 0.0 0.0 H -58.6 -41.0 0.0 0.0 0.0 HOH
 6.123
 O
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 GLY A:116 A:116 0.0 0.0 H -55.1 -41.3 0.0 0.0 0.0 HOH
 4.177
 O
 O
GLY B:116 B:116 0.0 0.0 H -55.5 -46.5 0.0 0.0 0.0 HOH
 4.158
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 GLY A:116 A:116 0.0 0.0 H -59.2 -42.9