Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241808770 . G A CCDS2543.1:NM_000030.2:c.349Gag>Aag_NP_000021.1:p.117E>K Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 GLU A:117 A:117 120.0 0.632 H -56.2 -59.1 112.0 0.589 0.043 A:P21549:0.042
 GOL
HOH
 7.849
7.971
 OE1
O
 O2
O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 GLU A:117 A:117 117.0 0.616 H -52.2 -55.1 103.0 0.542 0.074 A:P21549:0.074
 HOH
 5.732
 OE1
 O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 GLU A:117 A:117 119.0 0.626 H -58.3 -44.7 112.0 0.589 0.037 A:P21549:0.037
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 GLU A:117 A:117 121.0 0.637 H -55.9 -49.3 121.0 0.637 0.0
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 GLU A:119 A:117 120.0 0.632 H -67.2 -41.6 108.0 0.568 0.064 C:P21549:0.063
 HOH
 2.748
 OE1
 O
GLU C:119 C:117 126.0 0.663 H -64.7 -35.7 114.0 0.6 0.063 A:P21549:0.063
 HOH
 2.654
 OE1
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 GLU A:117 A:117 120.0 0.632 H -53.8 -46.0 111.0 0.584 0.048 A:P21549:0.047
 HOH
 7.130
 O
 O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 GLU A:119 A:117 118.0 0.621 H -63.6 -46.4 106.0 0.558 0.063 B:P21549:0.063
 BME
HOH
 9.996
2.511
 OE2
OE2
 O1
O
GLU B:119 C:117 119.0 0.626 H -61.0 -52.3 108.0 0.568 0.058 A:P21549:0.058
 HOH
 2.707
 OE1
 O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 GLU A:119 A:117 124.0 0.653 H -64.3 -40.7 115.0 0.605 0.048 B:P21549:0.047
 GOL
 8.181
 OE1
 O1
GLU B:119 B:117 123.0 0.647 H -66.4 -41.8 112.0 0.589 0.058 A:P21549:0.058
GLU C:119 C:117 125.0 0.658 H -65.6 -41.3 NA NA NA
GLU D:119 D:117 126.0 0.663 H -67.4 -39.6 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 GLU A:117 A:117 121.0 0.637 H -63.4 -44.5 121.0 0.637 0.0 GOL
HOH
 7.986
2.713
 OE1
OE1
 C3
O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 GLU A:128 A:117 118.0 0.621 H -54.7 -45.8 106.0 0.558 0.063 B:P21549:0.063
 HOH
 2.178
 OE2
 O
GLU B:128 B:117 116.0 0.611 H -60.9 -45.9 104.0 0.547 0.064 A:P21549:0.063
 HOH
 2.620
 OE1
 O
GLU C:128 E:117 119.0 0.626 H -65.5 -43.2 NA NA NA
GLU D:128 G:117 114.0 0.6 H -58.0 -45.8 NA NA NA
GLU E:128 M:117 117.0 0.616 H -57.2 -46.2 NA NA NA
GLU F:128 N:117 118.0 0.621 H -63.9 -40.9 NA NA NA
GLU G:128 S:117 121.0 0.637 H -56.1 -47.8 NA NA NA
GLU H:128 T:117 119.0 0.626 H -59.3 -46.8 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 GLU A:119 A:117 116.0 0.611 H -63.0 -54.6 106.0 0.558 0.053 B:P21549:0.053
GLU B:119 C:117 117.0 0.616 H -55.4 -48.8 108.0 0.568 0.048 A:P21549:0.047
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 GLU A:117 A:117 119.0 0.626 H -50.4 -55.6 114.0 0.6 0.026 A:P21549:0.026
 HOH
 2.805
 OE1
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 GLU A:117 A:117 128.0 0.674 H -61.0 -46.8 121.0 0.637 0.037 A:P21549:0.037
 HOH
 2.677
 OE1
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 GLU A:112 A:117 119.0 0.626 H -61.2 -42.2 108.0 0.568 0.058 B:P21549:0.058
 HOH
 2.564
 OE2
 O
GLU B:112 B:117 122.0 0.642 H -64.0 -48.4 111.0 0.584 0.058 A:P21549:0.058
 HOH
 2.566
 HB2
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 GLU A:112 A:117 120.0 0.632 H -65.0 -39.7 108.0 0.568 0.064 B:P21549:0.063
 HOH
 2.493
 OE2
 O
GLU B:112 B:117 122.0 0.642 H -63.2 -46.3 112.0 0.589 0.053 A:P21549:0.053
 HOH
 2.506
 HB3
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 GLU A:117 A:117 123.0 0.647 H -64.2 -43.6 112.0 0.589 0.058 B:P21549:0.058
 GOL
HOH
 7.985
2.415
 OE1
OE2
 C3
O
GLU B:117 B:117 122.0 0.642 H -63.3 -40.5 112.0 0.589 0.053 A:P21549:0.053
 HOH
 2.734
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 GLU A:117 A:117 119.0 0.626 H -64.4 -45.0