Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr2 | 241808773 | . | C | A | CCDS2543.1:NM_000030.2:c.352Cgc>Agc_NP_000021.1:p.118R>S | Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
1h0c | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2003-06-12 | ARG | A:118 | A:118 | 196.0 | 0.871 | H | -45.0 | -32.2 | 22.0 | 0.098 | 0.773 |
A:P21549:0.773 |
GOL HOH |
7.313 3.311 |
NH2 NH2 |
O2 O |
|
5og0 | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2017-09-27 | ARG | A:118 | A:118 | 200.0 | 0.889 | H | -52.3 | -37.0 | 21.0 | 0.093 | 0.796 |
A:P21549:0.796 |
HOH |
8.324 |
NH2 |
O |
|
6rv0 | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2020-04-08 | ARG | A:118 | A:118 | 196.0 | 0.871 | H | -68.1 | -26.7 | 17.0 | 0.076 | 0.795 |
A:P21549:0.796 |
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6rv1 | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2020-04-08 | ARG | A:118 | A:118 | 190.0 | 0.844 | H | -61.3 | -35.3 | 25.0 | 0.111 | 0.733 |
A:P21549:0.733 |
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3r9a | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2011-05-11 | ARG | A:120 | A:118 | 193.0 | 0.858 | H | -63.2 | -28.4 | 18.0 | 0.08 | 0.778 |
C:P21549:0.778 |
BTB HOH |
6.707 2.757 |
NH2 O |
O3 O |
|
ARG | C:120 | C:118 | 194.0 | 0.862 | H | -65.8 | -39.7 | 19.0 | 0.084 | 0.778 |
A:P21549:0.778 |
HOH |
2.658 |
NH2 |
O |
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5ofy | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2017-09-27 | ARG | A:118 | A:118 | 192.0 | 0.853 | H | -59.6 | -35.9 | 17.0 | 0.076 | 0.777 |
A:P21549:0.778 |
HOH |
4.001 |
O |
O |
|
4kyo | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2014-11-19 | ARG | A:120 | A:118 | 194.0 | 0.862 | H | -56.6 | -38.2 | 19.0 | 0.084 | 0.778 |
B:P21549:0.778 |
BTB HOH |
7.028 2.717 |
NH2 O |
C4 O |
|
ARG | B:120 | C:118 | 194.0 | 0.862 | H | -56.3 | -34.0 | 20.0 | 0.089 | 0.773 |
A:P21549:0.773 |
BTB HOH |
6.132 3.251 |
NH2 NH2 |
O6 O |
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4i8a | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2013-05-01 | ARG | A:120 | A:118 | 192.0 | 0.853 | H | -62.8 | -34.6 | 19.0 | 0.084 | 0.769 |
B:P21549:0.769 |
GOL |
8.286 |
NH2 |
O1 |
|
ARG | B:120 | B:118 | 195.0 | 0.867 | H | -61.6 | -34.3 | 21.0 | 0.093 | 0.774 |
A:P21549:0.773 |
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ARG | C:120 | C:118 | 193.0 | 0.858 | H | -62.2 | -35.0 | NA | NA | NA | |||||||||||||
ARG | D:120 | D:118 | 191.0 | 0.849 | H | -62.9 | -35.3 | NA | NA | NA | |||||||||||||
1j04 | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2003-11-11 | ARG | A:118 | A:118 | 191.0 | 0.849 | H | -60.9 | -35.2 | 191.0 | 0.849 | 0.0 |
GOL HOH |
8.085 6.605 |
NH2 C |
C2 O |
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5luc | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2017-09-20 | ARG | A:129 | A:118 | 200.0 | 0.889 | H | -62.8 | -31.0 | 21.0 | 0.093 | 0.796 |
B:P21549:0.796 |
BTB HOH |
6.359 2.709 |
NH2 O |
C6 O |
|
ARG | B:129 | B:118 | 196.0 | 0.871 | H | -59.7 | -30.8 | 20.0 | 0.089 | 0.782 |
A:P21549:0.782 |
BTB HOH |
6.497 2.912 |
NH2 O |
C6 O |
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ARG | C:129 | E:118 | 198.0 | 0.88 | H | -60.5 | -30.3 | NA | NA | NA | |||||||||||||
ARG | D:129 | G:118 | 196.0 | 0.871 | H | -61.7 | -30.9 | NA | NA | NA | |||||||||||||
ARG | E:129 | M:118 | 197.0 | 0.876 | H | -62.4 | -28.4 | NA | NA | NA | |||||||||||||
ARG | F:129 | N:118 | 198.0 | 0.88 | H | -66.2 | -29.0 | NA | NA | NA | |||||||||||||
ARG | G:129 | S:118 | 197.0 | 0.876 | H | -57.9 | -33.1 | NA | NA | NA | |||||||||||||
ARG | H:129 | T:118 | 201.0 | 0.893 | H | -62.5 | -30.3 | NA | NA | NA | |||||||||||||
4kxk | 1 | P21549 | 99.49 | 0.0 |
X-RAY |
2014-11-19 | ARG | A:120 | A:118 | 195.0 | 0.867 | H | -47.2 | -41.9 | 22.0 | 0.098 | 0.769 |
B:P21549:0.769 |
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ARG | B:120 | C:118 | 191.0 | 0.849 | H | -57.2 | -35.9 | 20.0 | 0.089 | 0.76 |
A:P21549:0.76 |
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4cbr | 1 | P21549 | 99.23 | 0.0 |
X-RAY |
2014-07-09 | ARG | A:118 | A:118 | 198.0 | 0.88 | H | -56.7 | -29.3 | 18.0 | 0.08 | 0.8 |
A:P21549:0.8 |
HOH |
3.698 |
NH2 |
O |
|
4cbs | 1 | P21549 | 98.72 | 0.0 |
X-RAY |
2014-07-09 | ARG | A:118 | A:118 | 197.0 | 0.876 | H | -57.4 | -37.3 | 14.0 | 0.062 | 0.814 |
A:P21549:0.813 |
HOH |
3.612 |
NH2 |
O |
|
5f9s | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2016-12-21 | ARG | A:113 | A:118 | 195.0 | 0.867 | H | -63.0 | -33.8 | 19.0 | 0.084 | 0.783 |
B:P21549:0.782 |
HOH |
1.874 |
HH21 |
O |
|
ARG | B:113 | B:118 | 192.0 | 0.853 | H | -58.5 | -34.8 | 18.0 | 0.08 | 0.773 |
A:P21549:0.773 |
HOH |
1.984 |
HH21 |
O |
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5hhy | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2017-01-25 | ARG | A:113 | A:118 | 195.0 | 0.867 | H | -65.0 | -31.0 | 19.0 | 0.084 | 0.783 |
B:P21549:0.782 |
HOH |
1.858 |
HH21 |
O |
|
ARG | B:113 | B:118 | 193.0 | 0.858 | H | -61.7 | -35.0 | 18.0 | 0.08 | 0.778 |
A:P21549:0.778 |
HOH |
1.998 |
HH21 |
O |
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2yob | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2013-10-30 | ARG | A:118 | A:118 | 197.0 | 0.876 | H | -61.2 | -34.1 | 20.0 | 0.089 | 0.787 |
B:P21549:0.787 |
BTB GOL HOH |
5.325 4.663 2.717 |
NH2 NH2 NH2 |
O8 O1 O |
|
ARG | B:118 | B:118 | 199.0 | 0.884 | H | -64.1 | -31.6 | 18.0 | 0.08 | 0.804 |
A:P21549:0.804 |
BTB HOH |
4.672 2.780 |
NH2 O |
O8 O |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-p21549-f1 | 1 | P21549 | 100.0 | 0.0 | ARG | A:118 | A:118 | 194.0 | 0.862 | H | -60.4 | -31.2 |