Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241808774 . G A CCDS2543.1:NM_000030.2:c.353cGc>cAc_NP_000021.1:p.118R>H Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 ARG A:118 A:118 196.0 0.871 H -45.0 -32.2 22.0 0.098 0.773 A:P21549:0.773
 GOL
HOH
 7.313
3.311
 NH2
NH2
 O2
O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 ARG A:118 A:118 200.0 0.889 H -52.3 -37.0 21.0 0.093 0.796 A:P21549:0.796
 HOH
 8.324
 NH2
 O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 ARG A:118 A:118 196.0 0.871 H -68.1 -26.7 17.0 0.076 0.795 A:P21549:0.796
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 ARG A:118 A:118 190.0 0.844 H -61.3 -35.3 25.0 0.111 0.733 A:P21549:0.733
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 ARG A:120 A:118 193.0 0.858 H -63.2 -28.4 18.0 0.08 0.778 C:P21549:0.778
 BTB
HOH
 6.707
2.757
 NH2
O
 O3
O
ARG C:120 C:118 194.0 0.862 H -65.8 -39.7 19.0 0.084 0.778 A:P21549:0.778
 HOH
 2.658
 NH2
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 ARG A:118 A:118 192.0 0.853 H -59.6 -35.9 17.0 0.076 0.777 A:P21549:0.778
 HOH
 4.001
 O
 O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 ARG A:120 A:118 194.0 0.862 H -56.6 -38.2 19.0 0.084 0.778 B:P21549:0.778
 BTB
HOH
 7.028
2.717
 NH2
O
 C4
O
ARG B:120 C:118 194.0 0.862 H -56.3 -34.0 20.0 0.089 0.773 A:P21549:0.773
 BTB
HOH
 6.132
3.251
 NH2
NH2
 O6
O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 ARG A:120 A:118 192.0 0.853 H -62.8 -34.6 19.0 0.084 0.769 B:P21549:0.769
 GOL
 8.286
 NH2
 O1
ARG B:120 B:118 195.0 0.867 H -61.6 -34.3 21.0 0.093 0.774 A:P21549:0.773
ARG C:120 C:118 193.0 0.858 H -62.2 -35.0 NA NA NA
ARG D:120 D:118 191.0 0.849 H -62.9 -35.3 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 ARG A:118 A:118 191.0 0.849 H -60.9 -35.2 191.0 0.849 0.0 GOL
HOH
 8.085
6.605
 NH2
C
 C2
O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 ARG A:129 A:118 200.0 0.889 H -62.8 -31.0 21.0 0.093 0.796 B:P21549:0.796
 BTB
HOH
 6.359
2.709
 NH2
O
 C6
O
ARG B:129 B:118 196.0 0.871 H -59.7 -30.8 20.0 0.089 0.782 A:P21549:0.782
 BTB
HOH
 6.497
2.912
 NH2
O
 C6
O
ARG C:129 E:118 198.0 0.88 H -60.5 -30.3 NA NA NA
ARG D:129 G:118 196.0 0.871 H -61.7 -30.9 NA NA NA
ARG E:129 M:118 197.0 0.876 H -62.4 -28.4 NA NA NA
ARG F:129 N:118 198.0 0.88 H -66.2 -29.0 NA NA NA
ARG G:129 S:118 197.0 0.876 H -57.9 -33.1 NA NA NA
ARG H:129 T:118 201.0 0.893 H -62.5 -30.3 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 ARG A:120 A:118 195.0 0.867 H -47.2 -41.9 22.0 0.098 0.769 B:P21549:0.769
ARG B:120 C:118 191.0 0.849 H -57.2 -35.9 20.0 0.089 0.76 A:P21549:0.76
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 ARG A:118 A:118 198.0 0.88 H -56.7 -29.3 18.0 0.08 0.8 A:P21549:0.8
 HOH
 3.698
 NH2
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 ARG A:118 A:118 197.0 0.876 H -57.4 -37.3 14.0 0.062 0.814 A:P21549:0.813
 HOH
 3.612
 NH2
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 ARG A:113 A:118 195.0 0.867 H -63.0 -33.8 19.0 0.084 0.783 B:P21549:0.782
 HOH
 1.874
 HH21
 O
ARG B:113 B:118 192.0 0.853 H -58.5 -34.8 18.0 0.08 0.773 A:P21549:0.773
 HOH
 1.984
 HH21
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 ARG A:113 A:118 195.0 0.867 H -65.0 -31.0 19.0 0.084 0.783 B:P21549:0.782
 HOH
 1.858
 HH21
 O
ARG B:113 B:118 193.0 0.858 H -61.7 -35.0 18.0 0.08 0.778 A:P21549:0.778
 HOH
 1.998
 HH21
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 ARG A:118 A:118 197.0 0.876 H -61.2 -34.1 20.0 0.089 0.787 B:P21549:0.787
 BTB
GOL
HOH
 5.325
4.663
2.717
 NH2
NH2
NH2
 O8
O1
O
ARG B:118 B:118 199.0 0.884 H -64.1 -31.6 18.0 0.08 0.804 A:P21549:0.804
 BTB
HOH
 4.672
2.780
 NH2
O
 O8
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 ARG A:118 A:118 194.0 0.862 H -60.4 -31.2