Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241808779 . G A CCDS2543.1:NM_000030.2:c.358Gga>Aga_NP_000021.1:p.120G>R Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 GLY A:120 A:120 37.0 0.493 101.9 360.0 37.0 0.493 0.0 HOH
 5.367
 N
 O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 GLY A:120 A:120 39.0 0.52 T 67.5 48.1 39.0 0.52 0.0
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 GLY A:120 A:120 36.0 0.48 T 80.1 33.8 36.0 0.48 0.0
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 GLY A:120 A:120 34.0 0.453 T 76.4 42.8 34.0 0.453 0.0
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 GLY A:122 A:120 29.0 0.387 T 96.4 5.8 29.0 0.387 0.0 HOH
 5.074
 N
 O
GLY C:122 C:120 36.0 0.48 T 91.9 0.5 36.0 0.48 0.0 HOH
 3.276
 N
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 GLY A:120 A:120 37.0 0.493 T 80.3 39.1 37.0 0.493 0.0 HOH
 4.295
 N
 O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 GLY A:122 A:120 33.0 0.44 T 74.2 24.8 33.0 0.44 0.0 HOH
 3.171
 N
 O
GLY B:122 C:120 33.0 0.44 T 81.6 11.9 33.0 0.44 0.0 HOH
 2.918
 O
 O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 GLY A:122 A:120 38.0 0.507 T 74.8 7.8 37.0 0.493 0.014 B:P21549:0.013
GLY B:122 B:120 37.0 0.493 T 78.6 7.6 37.0 0.493 0.0
GLY C:122 C:120 38.0 0.507 T 79.3 7.1 NA NA NA
GLY D:122 D:120 38.0 0.507 T 77.9 6.9 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 GLY A:120 A:120 39.0 0.52 T 56.9 55.4 39.0 0.52 0.0 HOH
 5.156
 N
 O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 GLY A:131 A:120 34.0 0.453 T 88.6 15.1 34.0 0.453 0.0 HOH
 2.761
 O
 O
GLY B:131 B:120 34.0 0.453 T 85.9 14.4 34.0 0.453 0.0 HOH
 3.265
 CA
 O
GLY C:131 E:120 35.0 0.467 T 88.3 15.3 NA NA NA
GLY D:131 G:120 35.0 0.467 T 83.5 12.9 NA NA NA
GLY E:131 M:120 36.0 0.48 T 84.7 11.4 NA NA NA
GLY F:131 N:120 33.0 0.44 T 85.5 15.0 NA NA NA
GLY G:131 S:120 34.0 0.453 T 89.2 13.2 NA NA NA
GLY H:131 T:120 34.0 0.453 T 91.8 8.2 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 GLY A:122 A:120 28.0 0.373 T 98.4 19.2 28.0 0.373 0.0
GLY B:122 C:120 28.0 0.373 T 100.2 10.1 28.0 0.373 0.0 HOH
 8.833
 O
 O
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 GLY A:120 A:120 39.0 0.52 T 73.4 62.9 39.0 0.52 0.0
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 GLY A:120 A:120 34.0 0.453 T 76.4 32.6 34.0 0.453 0.0 HOH
 5.291
 N
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 GLY A:115 A:120 34.0 0.453 T 83.6 9.8 34.0 0.453 0.0 HOH
 2.474
 HA3
 O
GLY B:115 B:120 36.0 0.48 T 80.3 11.8 36.0 0.48 0.0 HOH
 2.528
 O
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 GLY A:115 A:120 35.0 0.467 T 85.7 7.6 35.0 0.467 0.0 HOH
 2.584
 HA3
 O
GLY B:115 B:120 36.0 0.48 T 80.5 13.6 35.0 0.467 0.013 A:P21549:0.013
 HOH
 2.672
 O
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 GLY A:120 A:120 35.0 0.467 T 84.1 13.7 35.0 0.467 0.0 HOH
 3.206
 CA
 O
GLY B:120 B:120 36.0 0.48 T 92.0 7.1 36.0 0.48 0.0 HOH
 2.756
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 GLY A:120 A:120 36.0 0.48 T 82.7 19.0