Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241810104 . C A CCDS2543.1:NM_000030.2:c.402taC>taA_NP_000021.1:p.134Y>* Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 TYR A:134 A:134 2.0 0.009 -117.6 122.1 2.0 0.009 0.0 HOH
 3.608
 CE1
 O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 TYR A:134 A:134 5.0 0.022 -105.5 124.2 5.0 0.022 0.0 HOH
 9.014
 O
 O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 TYR A:134 A:134 5.0 0.022 -127.7 121.8 5.0 0.022 0.0 HOH
 4.327
 CE2
 O
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 TYR A:134 A:134 25.0 NA -136.1 124.8 25.0 NA NA HOH
 4.172
 O
 O
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 TYR A:136 A:134 5.0 0.022 -104.8 143.4 5.0 0.022 0.0 HOH
 2.681
 O
 O
TYR C:136 C:134 4.0 0.017 -106.7 135.6 4.0 0.017 0.0 HOH
 3.607
 CE1
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 TYR A:134 A:134 12.0 0.052 -115.5 122.8 12.0 0.052 0.0 HOH
 6.165
 CE2
 O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 TYR A:136 A:134 4.0 0.017 -98.0 136.2 4.0 0.017 0.0 BME
BME
HOH
 9.429
7.068
3.701
 O
CE2
CE1
 O1
S2
O
TYR B:136 C:134 3.0 0.013 -93.9 139.1 3.0 0.013 0.0 HOH
 3.843
 CE1
 O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 TYR A:136 A:134 7.0 0.03 -110.7 145.3 7.0 0.03 0.0
TYR B:136 B:134 6.0 0.026 -109.6 145.5 6.0 0.026 0.0
TYR C:136 C:134 7.0 0.03 -110.3 144.2 NA NA NA
TYR D:136 D:134 6.0 0.026 -108.8 144.6 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 TYR A:134 A:134 6.0 0.026 -117.4 132.8 6.0 0.026 0.0 GOL
HOH
 8.883
3.666
 CD2
CE1
 O1
O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 TYR A:145 A:134 5.0 0.022 -98.4 139.0 5.0 0.022 0.0 HOH
 2.910
 O
 O
TYR B:145 B:134 4.0 0.017 -97.1 135.4 4.0 0.017 0.0 HOH
 3.187
 O
 O
TYR C:145 E:134 6.0 0.026 -101.6 137.8 NA NA NA
TYR D:145 G:134 4.0 0.017 -96.3 138.8 NA NA NA
TYR E:145 M:134 4.0 0.017 -97.9 136.8 NA NA NA
TYR F:145 N:134 4.0 0.017 -97.8 135.6 NA NA NA
TYR G:145 S:134 4.0 0.017 -98.2 138.0 NA NA NA
TYR H:145 T:134 3.0 0.013 -97.2 136.7 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 TYR A:136 A:134 3.0 0.013 -105.2 131.9 3.0 0.013 0.0 HOH
 6.242
 CE1
 O
TYR B:136 C:134 2.0 0.009 -107.5 129.4 2.0 0.009 0.0 HOH
 4.586
 O
 O
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 TYR A:134 A:134 4.0 0.017 -59.7 137.8 4.0 0.017 0.0 HOH
 1.980
 O
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 TYR A:134 A:134 3.0 0.013 -112.9 130.9 3.0 0.013 0.0 HOH
 4.172
 CE2
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 TYR A:129 A:134 3.0 0.013 -101.4 136.0 3.0 0.013 0.0 HOH
 2.681
 O
 O
TYR B:129 B:134 4.0 0.017 -105.4 134.4 4.0 0.017 0.0 HOH
 2.710
 O
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 TYR A:129 A:134 3.0 0.013 -104.0 136.6 3.0 0.013 0.0 HOH
 2.708
 O
 O
TYR B:129 B:134 5.0 0.022 -101.1 134.5 5.0 0.022 0.0 HOH
 2.691
 O
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 TYR A:134 A:134 3.0 0.013 -96.9 137.6 3.0 0.013 0.0 HOH
 2.694
 O
 O
TYR B:134 B:134 4.0 0.017 -102.6 135.9 4.0 0.017 0.0 GOL
HOH
 5.187
2.888
 O
O
 O3
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 TYR A:134 A:134 6.0 0.026 -96.7 137.4