Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241810114 . G A CCDS2543.1:NM_000030.2:c.412Gag>Aag_NP_000021.1:p.138E>K Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 GLU A:138 A:138 73.0 0.384 H -43.2 -33.2 73.0 0.384 0.0 HOH
 3.571
 OE2
 O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 GLU A:138 A:138 62.0 0.326 H -51.9 -30.0 62.0 0.326 0.0
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 GLU A:138 A:138 82.0 0.432 H -48.9 -36.3 82.0 0.432 0.0 HOH
 3.981
 N
 O
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 GLU A:138 A:138 99.0 0.521 H -48.6 -35.9 99.0 0.521 0.0 HOH
 6.726
 N
 O
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 GLU A:140 A:138 63.0 0.332 H -63.9 -47.6 63.0 0.332 0.0 HOH
 2.517
 OE2
 O
GLU C:140 C:138 54.0 0.284 H -59.5 -44.2 54.0 0.284 0.0 HOH
 3.301
 CG
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 GLU A:138 A:138 72.0 0.379 H -62.6 -29.4 72.0 0.379 0.0 HOH
 3.356
 N
 O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 GLU A:140 A:138 58.0 0.305 H -58.5 -40.7 58.0 0.305 0.0 BME
HOH
 8.777
2.695
 O
OE2
 S2
O
GLU B:140 C:138 62.0 0.326 H -54.9 -44.8 62.0 0.326 0.0 HOH
 2.651
 O
 O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 GLU A:140 A:138 67.0 0.353 H -61.6 -42.7 67.0 0.353 0.0
GLU B:140 B:138 65.0 0.342 H -59.3 -44.1 65.0 0.342 0.0
GLU C:140 C:138 74.0 0.389 H -59.8 -43.0 NA NA NA
GLU D:140 D:138 65.0 0.342 H -58.9 -43.6 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 GLU A:138 A:138 70.0 0.368 H -41.9 -30.1 70.0 0.368 0.0 GOL
HOH
 3.629
5.192
 CA
OE1
 O1
O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 GLU A:149 A:138 66.0 0.347 H -58.5 -46.2 66.0 0.347 0.0 HOH
 2.657
 OE2
 O
GLU B:149 B:138 62.0 0.326 H -68.9 -40.0 62.0 0.326 0.0 HOH
 2.932
 OE1
 O
GLU C:149 E:138 63.0 0.332 H -60.9 -44.2 NA NA NA
GLU D:149 G:138 65.0 0.342 H -62.6 -42.4 NA NA NA
GLU E:149 M:138 64.0 0.337 H -64.8 -45.4 NA NA NA
GLU F:149 N:138 47.0 0.247 H -63.2 -45.1 NA NA NA
GLU G:149 S:138 57.0 0.3 H -61.3 -45.5 NA NA NA
GLU H:149 T:138 64.0 0.337 H -66.8 -42.4 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 GLU A:140 A:138 67.0 0.353 H -61.3 -38.9 67.0 0.353 0.0
GLU B:140 C:138 62.0 0.326 H -53.3 -44.5 62.0 0.326 0.0 HOH
 6.963
 N
 O
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 GLU A:138 A:138 76.0 0.4 H -71.4 -25.9 76.0 0.4 0.0 HOH
 4.255
 N
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 GLU A:138 A:138 46.0 0.242 H -54.0 -34.0 46.0 0.242 0.0 HOH
 5.504
 CG
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 GLU A:133 A:138 60.0 0.316 H -64.6 -45.2 60.0 0.316 0.0 HOH
 2.465
 OE2
 O
GLU B:133 B:138 60.0 0.316 H -63.1 -43.5 60.0 0.316 0.0 HOH
 2.883
 HG3
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 GLU A:133 A:138 64.0 0.337 H -60.9 -46.3 64.0 0.337 0.0 HOH
 2.618
 OE1
 O
GLU B:133 B:138 61.0 0.321 H -63.7 -43.6 61.0 0.321 0.0 HOH
 2.868
 HG3
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 GLU A:138 A:138 57.0 0.3 H -61.1 -47.5 57.0 0.3 0.0 HOH
 2.898
 O
 O
GLU B:138 B:138 57.0 0.3 H -62.7 -45.5 57.0 0.3 0.0 GOL
HOH
 6.799
3.152
 N
O
 O3
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 GLU A:138 A:138 63.0 0.332 H -61.0 -40.2