Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241810125 . G A CCDS2543.1:NM_000030.2:c.423gaG>gaA_NP_000021.1:p.141E>E Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 GLU A:141 A:141 148.0 0.779 H -54.7 -37.2 148.0 0.779 0.0 HOH
 6.864
 OE2
 O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 GLU A:141 A:141 129.0 0.679 H -59.1 -57.4 129.0 0.679 0.0
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 GLU A:141 A:141 107.0 0.563 H -69.8 -44.0 107.0 0.563 0.0 HOH
 3.109
 OE1
 O
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 GLU A:141 A:141 114.0 0.6 H -65.6 -42.9 114.0 0.6 0.0 HOH
 9.125
 OE1
 O
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 GLU A:143 A:141 137.0 0.721 H -62.5 -39.5 137.0 0.721 0.0 HOH
 2.698
 OE2
 O
GLU C:143 C:141 112.0 0.589 H -62.9 -36.0 112.0 0.589 0.0 HOH
 2.456
 OE2
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 GLU A:141 A:141 138.0 0.726 H -53.3 -38.8 138.0 0.726 0.0 HOH
 3.580
 O
 O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 GLU A:143 A:141 126.0 0.663 H -62.7 -46.4 126.0 0.663 0.0 BME
HOH
 9.890
2.886
 CB
O
 S2
O
GLU B:143 C:141 95.0 0.5 H -61.7 -47.6 95.0 0.5 0.0 HOH
 4.090
 CB
 O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 GLU A:143 A:141 136.0 0.716 H -53.5 -38.3 136.0 0.716 0.0
GLU B:143 B:141 139.0 0.732 H -52.8 -38.6 139.0 0.732 0.0
GLU C:143 C:141 59.0 NA H -55.3 -34.5 NA NA NA
GLU D:143 D:141 129.0 0.679 H -53.3 -37.9 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 GLU A:141 A:141 135.0 0.711 H -56.5 -52.8 135.0 0.711 0.0 GOL
HOH
 2.799
5.367
 CD
OE2
 O1
O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 GLU A:152 A:141 110.0 0.579 H -62.9 -40.3 110.0 0.579 0.0 HOH
 2.018
 OE1
 O
GLU B:152 B:141 119.0 0.626 H -65.5 -41.1 119.0 0.626 0.0 HOH
 2.396
 OE1
 O
GLU C:152 E:141 128.0 0.674 H -60.8 -45.8 NA NA NA
GLU D:152 G:141 114.0 0.6 H -67.1 -38.4 NA NA NA
GLU E:152 M:141 133.0 0.7 H -58.3 -38.4 NA NA NA
GLU F:152 N:141 126.0 0.663 H -53.5 -44.8 NA NA NA
GLU G:152 S:141 135.0 0.711 H -60.5 -42.7 NA NA NA
GLU H:152 T:141 82.0 NA H -60.8 -40.8 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 GLU A:143 A:141 117.0 0.616 H -52.7 -44.7 117.0 0.616 0.0
GLU B:143 C:141 113.0 0.595 H -59.0 -40.7 113.0 0.595 0.0 HOH
 9.842
 N
 O
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 GLU A:141 A:141 125.0 0.658 H -72.2 -55.1 125.0 0.658 0.0 HOH
 3.685
 N
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 GLU A:141 A:141 120.0 0.632 H -57.5 -55.1 120.0 0.632 0.0 HOH
 2.478
 OE2
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 GLU A:136 A:141 109.0 0.574 H -63.1 -36.0 109.0 0.574 0.0 HOH
 3.120
 HB3
 O
GLU B:136 B:141 103.0 0.542 H -61.8 -40.6 103.0 0.542 0.0 HOH
 2.690
 O
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 GLU A:136 A:141 109.0 0.574 H -62.4 -38.1 109.0 0.574 0.0 HOH
 3.113
 HB3
 O
GLU B:136 B:141 107.0 0.563 H -63.7 -40.3 107.0 0.563 0.0 HOH
 2.636
 HA
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 GLU A:141 A:141 125.0 0.658 H -66.9 -41.6 125.0 0.658 0.0 HOH
 2.865
 O
 O
GLU B:141 B:141 103.0 0.542 H -63.9 -46.0 103.0 0.542 0.0 HOH
 3.720
 OE1
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 GLU A:141 A:141 109.0 0.574 H -58.4 -47.6