Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241810781 . A C CCDS2543.1:NM_000030.2:c.439Aag>Cag_NP_000021.1:p.147K>Q Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 LYS A:147 A:147 142.0 0.71 33.6 55.3 142.0 0.71 0.0 HOH
 2.508
 O
 O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 LYS A:147 A:147 80.0 NA 55.6 38.0 80.0 NA NA
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 LYS A:147 A:147 73.0 NA 47.6 62.0 73.0 NA NA
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 LYS A:147 A:147 75.0 NA 44.7 64.7 75.0 NA NA
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 LYS A:149 A:147 163.0 0.815 50.9 50.7 163.0 0.815 0.0 HOH
 3.273
 C
 O
LYS C:149 C:147 151.0 0.755 52.4 58.4 151.0 0.755 0.0 HOH
 2.571
 O
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 LYS A:147 A:147 71.0 NA 43.2 52.1 71.0 NA NA HOH
 5.993
 N
 O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 LYS A:149 A:147 172.0 0.86 36.6 55.4 172.0 0.86 0.0 HOH
 2.561
 O
 O
LYS B:149 C:147 159.0 0.795 38.0 55.1 159.0 0.795 0.0 BME
HOH
 3.648
2.569
 O
NZ
 C2
O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 LYS A:149 A:147 77.0 NA 37.7 52.4 77.0 NA NA
LYS B:149 B:147 176.0 0.88 36.1 54.2 176.0 0.88 0.0
LYS C:149 C:147 151.0 NA 38.4 52.9 NA NA NA
LYS D:149 D:147 77.0 NA 40.3 50.9 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 LYS A:147 A:147 183.0 0.915 35.4 56.2 183.0 0.915 0.0 HOH
 3.390
 NZ
 O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 LYS A:158 A:147 128.0 0.64 42.8 58.7 128.0 0.64 0.0 HOH
 2.852
 O
 O
LYS B:158 B:147 165.0 0.825 45.4 51.7 165.0 0.825 0.0 HOH
 2.747
 O
 O
LYS C:158 E:147 120.0 NA 48.2 53.4 NA NA NA
LYS D:158 G:147 169.0 0.845 46.8 51.6 NA NA NA
LYS E:158 M:147 122.0 NA 46.0 54.4 NA NA NA
LYS F:158 N:147 122.0 NA 46.0 50.3 NA NA NA
LYS G:158 S:147 122.0 NA 44.5 54.7 NA NA NA
LYS H:158 T:147 110.0 0.55 45.3 53.2 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 LYS A:149 A:147 175.0 0.875 27.9 67.4 175.0 0.875 0.0
LYS B:149 C:147 173.0 0.865 33.5 65.5 173.0 0.865 0.0 HOH
 4.974
 O
 O
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 LYS A:147 A:147 180.0 0.9 37.0 53.1 180.0 0.9 0.0 HOH
 7.360
 O
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 LYS A:147 A:147 166.0 0.83 42.2 55.2 166.0 0.83 0.0 HOH
 9.565
 O
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 LYS A:142 A:147 166.0 0.83 45.7 56.2 166.0 0.83 0.0 HOH
 2.597
 O
 O
LYS B:142 B:147 133.0 0.665 49.8 55.6 133.0 0.665 0.0 HOH
 2.346
 HZ3
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 LYS A:142 A:147 148.0 0.74 43.8 58.1 148.0 0.74 0.0 HOH
 2.602
 O
 O
LYS B:142 B:147 135.0 0.675 46.2 60.9 135.0 0.675 0.0 HOH
 2.946
 HB2
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 LYS A:147 A:147 166.0 0.83 41.1 57.5 166.0 0.83 0.0 HOH
 2.476
 O
 O
LYS B:147 B:147 174.0 0.87 38.6 62.1 174.0 0.87 0.0 HOH
 2.549
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 LYS A:147 A:147 166.0 0.83 43.7 53.9