Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241810791 . T A CCDS2543.1:NM_000030.2:c.449cTg>cAg_NP_000021.1:p.150L>Q Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 LEU A:150 A:150 0.0 0.0 E -156.7 140.7 0.0 0.0 0.0 HOH
 7.110
 N
 O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 LEU A:150 A:150 1.0 0.006 E -158.5 131.5 1.0 0.006 0.0
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 LEU A:150 A:150 5.0 NA E -152.2 132.1 5.0 NA NA HOH
 9.872
 O
 O
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 LEU A:150 A:150 8.0 NA E -147.0 136.6 8.0 NA NA
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 LEU A:152 A:150 0.0 0.0 E -143.5 143.2 0.0 0.0 0.0 HOH
 6.531
 N
 O
LEU C:152 C:150 0.0 0.0 E -145.6 139.8 0.0 0.0 0.0 HOH
 5.246
 N
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 LEU A:150 A:150 1.0 0.006 E -151.0 132.7 1.0 0.006 0.0 HOH
 6.643
 O
 O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 LEU A:152 A:150 0.0 0.0 E -153.9 142.4 0.0 0.0 0.0 HOH
 4.895
 N
 O
LEU B:152 C:150 0.0 0.0 E -148.9 140.7 0.0 0.0 0.0 BME
HOH
 6.272
6.509
 N
N
 C1
O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 LEU A:152 A:150 0.0 0.0 E -156.9 144.5 0.0 0.0 0.0
LEU B:152 B:150 0.0 0.0 E -156.4 143.5 0.0 0.0 0.0
LEU C:152 C:150 0.0 0.0 E -155.8 143.9 NA NA NA
LEU D:152 D:150 0.0 0.0 E -157.2 142.6 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 LEU A:150 A:150 1.0 0.006 E -139.1 140.5 1.0 0.006 0.0
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 LEU A:161 A:150 1.0 0.006 E -151.3 136.0 1.0 0.006 0.0 HOH
 4.902
 N
 O
LEU B:161 B:150 0.0 0.0 E -147.0 135.1 0.0 0.0 0.0 HOH
 4.955
 N
 O
LEU C:161 E:150 1.0 0.006 E -152.4 136.1 NA NA NA
LEU D:161 G:150 1.0 0.006 E -149.7 137.0 NA NA NA
LEU E:161 M:150 1.0 0.006 E -150.3 138.6 NA NA NA
LEU F:161 N:150 0.0 0.0 E -152.2 134.5 NA NA NA
LEU G:161 S:150 0.0 0.0 E -151.1 138.2 NA NA NA
LEU H:161 T:150 0.0 0.0 E -143.2 141.3 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 LEU A:152 A:150 0.0 0.0 E -149.8 143.0 0.0 0.0 0.0
LEU B:152 C:150 0.0 0.0 E -153.0 137.1 0.0 0.0 0.0 HOH
 7.627
 N
 O
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 LEU A:150 A:150 1.0 0.006 E -139.7 137.5 1.0 0.006 0.0 HOH
 2.810
 CA
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 LEU A:150 A:150 1.0 0.006 E -139.7 142.5 1.0 0.006 0.0 HOH
 8.954
 N
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 LEU A:145 A:150 0.0 0.0 E -147.8 137.1 0.0 0.0 0.0 HOH
 4.741
 N
 O
LEU B:145 B:150 0.0 0.0 E -150.1 137.1 0.0 0.0 0.0 HOH
 4.810
 N
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 LEU A:145 A:150 0.0 0.0 E -150.4 136.4 0.0 0.0 0.0 HOH
 4.815
 N
 O
LEU B:145 B:150 0.0 0.0 E -149.8 136.9 0.0 0.0 0.0 HOH
 4.746
 N
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 LEU A:150 A:150 0.0 0.0 E -144.1 139.9 0.0 0.0 0.0 HOH
 4.988
 N
 O
LEU B:150 B:150 0.0 0.0 E -144.8 141.2 0.0 0.0 0.0 HOH
 4.762
 N
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 LEU A:150 A:150 1.0 0.006 E -144.2 135.3