Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr2 | 241810796 | . | T | A | CCDS2543.1:NM_000030.2:c.454Ttc>Atc_NP_000021.1:p.152F>I | Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
1h0c | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2003-06-12 | PHE | A:152 | A:152 | 0.0 | 0.0 | E | -116.8 | 124.1 | 0.0 | 0.0 | 0.0 |
PLP HOH |
6.916 4.135 |
CZ O |
N1 O |
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5og0 | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2017-09-27 | PHE | A:152 | A:152 | 0.0 | 0.0 | E | -104.5 | 127.3 | 0.0 | 0.0 | 0.0 |
PLP HOH |
6.992 8.576 |
CZ CZ |
N1 O |
||
6rv0 | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2020-04-08 | PHE | A:152 | A:152 | 1.0 | 0.005 | E | -96.8 | 126.9 | 1.0 | 0.005 | 0.0 |
PMP HOH |
6.611 3.121 |
CZ O |
N1 O |
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6rv1 | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2020-04-08 | PHE | A:152 | A:152 | 8.0 | 0.038 | E | -114.6 | 118.2 | 8.0 | 0.038 | 0.0 |
PLP |
6.848 |
CZ |
N1 |
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3r9a | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2011-05-11 | PHE | A:154 | A:152 | 0.0 | 0.0 | E | -102.8 | 129.5 | 0.0 | 0.0 | 0.0 |
HOH |
4.287 |
O |
O |
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PHE | C:154 | C:152 | 0.0 | 0.0 | E | -105.5 | 128.2 | 0.0 | 0.0 | 0.0 |
HOH |
4.259 |
O |
O |
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5ofy | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2017-09-27 | PHE | A:152 | A:152 | 0.0 | 0.0 | E | -109.2 | 123.7 | 0.0 | 0.0 | 0.0 |
PLP HOH |
7.003 4.813 |
CZ CE1 |
N1 O |
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4kyo | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2014-11-19 | PHE | A:154 | A:152 | 0.0 | 0.0 | E | -104.4 | 128.7 | 0.0 | 0.0 | 0.0 |
HOH |
4.215 |
O |
O |
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PHE | B:154 | C:152 | 0.0 | 0.0 | E | -103.6 | 129.5 | 0.0 | 0.0 | 0.0 |
HOH |
4.136 |
CE2 |
O |
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4i8a | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2013-05-01 | PHE | A:154 | A:152 | 0.0 | 0.0 | E | -100.5 | 132.6 | 0.0 | 0.0 | 0.0 | ||||||
PHE | B:154 | B:152 | 0.0 | 0.0 | E | -102.4 | 130.1 | 0.0 | 0.0 | 0.0 | |||||||||||||
PHE | C:154 | C:152 | 0.0 | 0.0 | E | -100.4 | 131.2 | NA | NA | NA | |||||||||||||
PHE | D:154 | D:152 | 0.0 | 0.0 | E | -101.5 | 129.7 | NA | NA | NA | |||||||||||||
1j04 | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2003-11-11 | PHE | A:152 | A:152 | 0.0 | 0.0 | E | -113.4 | 136.6 | 0.0 | 0.0 | 0.0 |
HOH |
4.302 |
O |
O |
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5luc | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2017-09-20 | PHE | A:163 | A:152 | 0.0 | 0.0 | E | -103.8 | 127.0 | 0.0 | 0.0 | 0.0 |
PLP HOH |
6.967 3.589 |
CZ CZ |
N1 O |
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PHE | B:163 | B:152 | 0.0 | 0.0 | E | -105.0 | 128.7 | 0.0 | 0.0 | 0.0 |
PLP HOH |
7.067 3.586 |
CZ CZ |
N1 O |
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PHE | C:163 | E:152 | 0.0 | 0.0 | E | -102.3 | 128.4 | NA | NA | NA | |||||||||||||
PHE | D:163 | G:152 | 0.0 | 0.0 | E | -103.6 | 128.3 | NA | NA | NA | |||||||||||||
PHE | E:163 | M:152 | 0.0 | 0.0 | E | -101.0 | 135.1 | NA | NA | NA | |||||||||||||
PHE | F:163 | N:152 | 0.0 | 0.0 | E | -100.1 | 128.2 | NA | NA | NA | |||||||||||||
PHE | G:163 | S:152 | 0.0 | 0.0 | E | -102.1 | 131.6 | NA | NA | NA | |||||||||||||
PHE | H:163 | T:152 | 0.0 | 0.0 | E | -104.5 | 130.9 | NA | NA | NA | |||||||||||||
4kxk | 1 | P21549 | 99.49 | 0.0 |
X-RAY |
2014-11-19 | PHE | A:154 | A:152 | 0.0 | 0.0 | E | -107.2 | 133.8 | 0.0 | 0.0 | 0.0 |
HOH |
4.360 |
CE2 |
O |
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PHE | B:154 | C:152 | 0.0 | 0.0 | E | -104.6 | 129.9 | 0.0 | 0.0 | 0.0 |
HOH |
4.210 |
CE2 |
O |
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4cbr | 1 | P21549 | 99.23 | 0.0 |
X-RAY |
2014-07-09 | PHE | A:152 | A:152 | 0.0 | 0.0 | E | -112.1 | 134.1 | 0.0 | 0.0 | 0.0 |
PLP HOH |
6.976 3.835 |
CZ CE1 |
N1 O |
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4cbs | 1 | P21549 | 98.72 | 0.0 |
X-RAY |
2014-07-09 | PHE | A:152 | A:152 | 0.0 | 0.0 | E | -102.5 | 131.4 | 0.0 | 0.0 | 0.0 |
PLP HOH |
6.690 4.021 |
CZ CE1 |
N1 O |
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5f9s | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2016-12-21 | PHE | A:147 | A:152 | 0.0 | 0.0 | E | -106.1 | 129.2 | 0.0 | 0.0 | 0.0 |
PLP HOH |
5.839 3.559 |
HZ HE1 |
N1 O |
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PHE | B:147 | B:152 | 0.0 | 0.0 | E | -105.4 | 128.1 | 0.0 | 0.0 | 0.0 |
PLP HOH |
5.800 3.705 |
HZ HE1 |
N1 O |
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5hhy | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2017-01-25 | PHE | A:147 | A:152 | 0.0 | 0.0 | E | -104.9 | 131.1 | 0.0 | 0.0 | 0.0 |
PLR HOH |
5.896 3.563 |
HZ HE1 |
N1 O |
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PHE | B:147 | B:152 | 0.0 | 0.0 | E | -105.1 | 126.8 | 0.0 | 0.0 | 0.0 |
PLR HOH |
5.786 3.673 |
HZ HE1 |
H2A3 O |
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2yob | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2013-10-30 | PHE | A:152 | A:152 | 0.0 | 0.0 | E | -97.5 | 129.3 | 0.0 | 0.0 | 0.0 |
PLP HOH |
6.640 4.307 |
CZ O |
N1 O |
||
PHE | B:152 | B:152 | 0.0 | 0.0 | E | -99.3 | 129.1 | 0.0 | 0.0 | 0.0 |
PLP HOH |
6.707 4.325 |
CZ O |
N1 O |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-p21549-f1 | 1 | P21549 | 100.0 | 0.0 | PHE | A:152 | A:152 | 0.0 | 0.0 | E | -102.2 | 128.4 |