Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241810797 . T A CCDS2543.1:NM_000030.2:c.455tTc>tAc_NP_000021.1:p.152F>Y Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 PHE A:152 A:152 0.0 0.0 E -116.8 124.1 0.0 0.0 0.0 PLP
HOH
 6.916
4.135
 CZ
O
 N1
O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 PHE A:152 A:152 0.0 0.0 E -104.5 127.3 0.0 0.0 0.0 PLP
HOH
 6.992
8.576
 CZ
CZ
 N1
O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 PHE A:152 A:152 1.0 0.005 E -96.8 126.9 1.0 0.005 0.0 PMP
HOH
 6.611
3.121
 CZ
O
 N1
O
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 PHE A:152 A:152 8.0 0.038 E -114.6 118.2 8.0 0.038 0.0 PLP
 6.848
 CZ
 N1
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 PHE A:154 A:152 0.0 0.0 E -102.8 129.5 0.0 0.0 0.0 HOH
 4.287
 O
 O
PHE C:154 C:152 0.0 0.0 E -105.5 128.2 0.0 0.0 0.0 HOH
 4.259
 O
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 PHE A:152 A:152 0.0 0.0 E -109.2 123.7 0.0 0.0 0.0 PLP
HOH
 7.003
4.813
 CZ
CE1
 N1
O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 PHE A:154 A:152 0.0 0.0 E -104.4 128.7 0.0 0.0 0.0 HOH
 4.215
 O
 O
PHE B:154 C:152 0.0 0.0 E -103.6 129.5 0.0 0.0 0.0 HOH
 4.136
 CE2
 O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 PHE A:154 A:152 0.0 0.0 E -100.5 132.6 0.0 0.0 0.0
PHE B:154 B:152 0.0 0.0 E -102.4 130.1 0.0 0.0 0.0
PHE C:154 C:152 0.0 0.0 E -100.4 131.2 NA NA NA
PHE D:154 D:152 0.0 0.0 E -101.5 129.7 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 PHE A:152 A:152 0.0 0.0 E -113.4 136.6 0.0 0.0 0.0 HOH
 4.302
 O
 O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 PHE A:163 A:152 0.0 0.0 E -103.8 127.0 0.0 0.0 0.0 PLP
HOH
 6.967
3.589
 CZ
CZ
 N1
O
PHE B:163 B:152 0.0 0.0 E -105.0 128.7 0.0 0.0 0.0 PLP
HOH
 7.067
3.586
 CZ
CZ
 N1
O
PHE C:163 E:152 0.0 0.0 E -102.3 128.4 NA NA NA
PHE D:163 G:152 0.0 0.0 E -103.6 128.3 NA NA NA
PHE E:163 M:152 0.0 0.0 E -101.0 135.1 NA NA NA
PHE F:163 N:152 0.0 0.0 E -100.1 128.2 NA NA NA
PHE G:163 S:152 0.0 0.0 E -102.1 131.6 NA NA NA
PHE H:163 T:152 0.0 0.0 E -104.5 130.9 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 PHE A:154 A:152 0.0 0.0 E -107.2 133.8 0.0 0.0 0.0 HOH
 4.360
 CE2
 O
PHE B:154 C:152 0.0 0.0 E -104.6 129.9 0.0 0.0 0.0 HOH
 4.210
 CE2
 O
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 PHE A:152 A:152 0.0 0.0 E -112.1 134.1 0.0 0.0 0.0 PLP
HOH
 6.976
3.835
 CZ
CE1
 N1
O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 PHE A:152 A:152 0.0 0.0 E -102.5 131.4 0.0 0.0 0.0 PLP
HOH
 6.690
4.021
 CZ
CE1
 N1
O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 PHE A:147 A:152 0.0 0.0 E -106.1 129.2 0.0 0.0 0.0 PLP
HOH
 5.839
3.559
 HZ
HE1
 N1
O
PHE B:147 B:152 0.0 0.0 E -105.4 128.1 0.0 0.0 0.0 PLP
HOH
 5.800
3.705
 HZ
HE1
 N1
O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 PHE A:147 A:152 0.0 0.0 E -104.9 131.1 0.0 0.0 0.0 PLR
HOH
 5.896
3.563
 HZ
HE1
 N1
O
PHE B:147 B:152 0.0 0.0 E -105.1 126.8 0.0 0.0 0.0 PLR
HOH
 5.786
3.673
 HZ
HE1
 H2A3
O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 PHE A:152 A:152 0.0 0.0 E -97.5 129.3 0.0 0.0 0.0 PLP
HOH
 6.640
4.307
 CZ
O
 N1
O
PHE B:152 B:152 0.0 0.0 E -99.3 129.1 0.0 0.0 0.0 PLP
HOH
 6.707
4.325
 CZ
O
 N1
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 PHE A:152 A:152 0.0 0.0 E -102.2 128.4