Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241810808 . G A CCDS2543.1:NM_000030.2:c.466Ggg>Agg_NP_000021.1:p.156G>R Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 GLY A:156 A:156 1.0 0.013 E -109.3 95.6 1.0 0.013 0.0 PLP
AOA
HOH
 3.176
8.223
2.786
 O
O
O
 C2A
O2
O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 GLY A:156 A:156 0.0 0.0 E -104.0 109.7 0.0 0.0 0.0 PLP
HOH
 3.184
2.687
 O
O
 C2A
O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 GLY A:156 A:156 0.0 0.0 E -77.3 97.2 0.0 0.0 0.0 PMP
HOH
 3.275
3.309
 O
O
 C2A
O
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 GLY A:156 A:156 0.0 0.0 E -88.5 97.0 0.0 0.0 0.0 PLP
 3.518
 O
 C2A
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 GLY A:158 A:156 0.0 0.0 E -98.4 100.5 0.0 0.0 0.0 HOH
 2.750
 O
 O
GLY C:158 C:156 0.0 0.0 E -106.6 98.7 0.0 0.0 0.0 HOH
 2.833
 O
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 GLY A:156 A:156 0.0 0.0 E -98.0 101.1 0.0 0.0 0.0 PLP
DIO
HOH
 3.201
9.385
6.647
 O
O
O
 C2A
C2'
O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 GLY A:158 A:156 0.0 0.0 E -103.7 94.7 0.0 0.0 0.0 BME
HOH
 7.356
2.840
 N
O
 O1
O
GLY B:158 C:156 0.0 0.0 E -101.5 97.9 0.0 0.0 0.0 HOH
 2.659
 O
 O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 GLY A:158 A:156 0.0 0.0 E -116.5 111.2 0.0 0.0 0.0 GOL
 9.902
 O
 O1
GLY B:158 B:156 0.0 0.0 E -117.3 108.8 0.0 0.0 0.0
GLY C:158 C:156 0.0 0.0 E -117.5 110.9 NA NA NA
GLY D:158 D:156 0.0 0.0 E -116.9 109.4 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 GLY A:156 A:156 0.0 0.0 B -114.8 100.5 0.0 0.0 0.0 AOA
HOH
 8.622
2.823
 O
O
 O2
O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 GLY A:167 A:156 1.0 0.013 E -104.6 99.4 1.0 0.013 0.0 PLP
HOH
 3.354
2.780
 O
O
 C2A
O
GLY B:167 B:156 1.0 0.013 E -107.4 104.9 1.0 0.013 0.0 PLP
HOH
 3.298
2.729
 O
O
 C2A
O
GLY C:167 E:156 1.0 0.013 E -106.0 100.7 NA NA NA
GLY D:167 G:156 0.0 0.0 E -105.0 103.1 NA NA NA
GLY E:167 M:156 1.0 0.013 E -104.8 99.9 NA NA NA
GLY F:167 N:156 1.0 0.013 E -109.6 100.9 NA NA NA
GLY G:167 S:156 1.0 0.013 E -103.6 99.9 NA NA NA
GLY H:167 T:156 1.0 0.013 E -99.2 102.3 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 GLY A:158 A:156 0.0 0.0 E -103.9 106.5 0.0 0.0 0.0 SO4
BME
HOH
 9.877
7.490
2.600
 O
O
O
 O4
O1
O
GLY B:158 C:156 0.0 0.0 E -107.6 105.6 0.0 0.0 0.0 SO4
HOH
 9.913
4.191
 O
O
 O3
O
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 GLY A:156 A:156 1.0 0.013 E -99.8 102.7 1.0 0.013 0.0 PLP
GOL
HOH
 3.399
8.716
6.716
 O
O
O
 C2A
O2
O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 GLY A:156 A:156 1.0 0.013 E -91.5 97.6 1.0 0.013 0.0 PLP
HOH
 3.581
6.197
 O
N
 C2A
O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 GLY A:151 A:156 1.0 0.013 E -98.8 100.9 1.0 0.013 0.0 PLP
HOH
 2.893
2.300
 O
H
 H2A1
O
GLY B:151 B:156 0.0 0.0 E -106.5 102.8 0.0 0.0 0.0 PLP
HOH
 2.798
2.214
 O
H
 H2A1
O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 GLY A:151 A:156 1.0 0.013 E -103.9 103.4 1.0 0.013 0.0 PLR
HOH
 3.010
2.367
 O
H
 H2A1
O
GLY B:151 B:156 0.0 0.0 E -104.8 102.2 0.0 0.0 0.0 PLR
HOH
 2.890
2.206
 O
H
 H2A1
O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 GLY A:156 A:156 0.0 0.0 E -98.1 103.8 0.0 0.0 0.0 PLP
HOH
 3.292
2.723
 O
O
 C2A
O
GLY B:156 B:156 1.0 0.013 E -100.9 100.7 1.0 0.013 0.0 PLP
HOH
 3.301
2.679
 O
O
 C2A
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 GLY A:156 A:156 1.0 0.013 E -106.4 96.2