Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241810824 . G A CCDS2543.1:NM_000030.2:c.482gGc>gAc_NP_000021.1:p.161G>D Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 GLY A:161 A:161 1.0 0.013 T 89.4 7.1 1.0 0.013 0.0 PLP
AOA
HOH
 9.065
9.044
3.369
 N
N
O
 O3
O2
O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 GLY A:161 A:161 2.0 0.027 T 81.9 18.8 2.0 0.027 0.0 PLP
HOH
 9.090
5.010
 N
O
 C2A
O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 GLY A:161 A:161 1.0 0.013 T 67.4 22.8 1.0 0.013 0.0 PMP
 9.008
 N
 C2A
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 GLY A:161 A:161 2.0 0.027 T 65.6 23.5 2.0 0.027 0.0 PLP
 9.290
 N
 C2A
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 GLY A:163 A:161 1.0 0.013 T 78.6 24.2 1.0 0.013 0.0 HOH
 2.842
 O
 O
GLY C:163 C:161 1.0 0.013 T 83.9 10.9 1.0 0.013 0.0 HOH
 2.905
 O
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 GLY A:161 A:161 1.0 0.013 T 76.3 17.3 1.0 0.013 0.0 PLP
HOH
 9.283
8.984
 N
N
 C2A
O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 GLY A:163 A:161 2.0 0.027 T 85.7 11.1 2.0 0.027 0.0 HOH
 3.018
 O
 O
GLY B:163 C:161 2.0 0.027 T 76.7 18.8 2.0 0.027 0.0 HOH
 2.917
 O
 O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 GLY A:163 A:161 2.0 0.027 T 74.7 28.9 2.0 0.027 0.0
GLY B:163 B:161 2.0 0.027 T 75.2 29.6 2.0 0.027 0.0
GLY C:163 C:161 1.0 0.013 T 74.6 28.7 NA NA NA
GLY D:163 D:161 2.0 0.027 T 75.5 28.8 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 GLY A:161 A:161 1.0 0.013 93.1 -0.3 1.0 0.013 0.0 HOH
 4.361
 O
 O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 GLY A:172 A:161 2.0 0.027 T 86.2 13.5 2.0 0.027 0.0 PLP
HOH
 9.047
2.971
 N
O
 C2A
O
GLY B:172 B:161 2.0 0.027 T 83.8 17.0 2.0 0.027 0.0 PLP
HOH
 9.027
2.870
 N
O
 C2A
O
GLY C:172 E:161 2.0 0.027 T 83.9 17.0 NA NA NA
GLY D:172 G:161 2.0 0.027 T 89.9 14.3 NA NA NA
GLY E:172 M:161 2.0 0.027 T 80.4 15.0 NA NA NA
GLY F:172 N:161 2.0 0.027 T 81.1 22.5 NA NA NA
GLY G:172 S:161 2.0 0.027 T 83.4 15.3 NA NA NA
GLY H:172 T:161 2.0 0.027 T 81.1 17.6 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 GLY A:163 A:161 2.0 0.027 T 87.1 28.2 2.0 0.027 0.0 BME
HOH
 8.239
9.622
 N
N
 O1
O
GLY B:163 C:161 2.0 0.027 T 85.8 28.2 2.0 0.027 0.0 HOH
 8.987
 N
 O
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 GLY A:161 A:161 2.0 0.027 T 92.0 11.0 2.0 0.027 0.0 PLP
GOL
HOH
 8.899
9.419
3.752
 N
N
O
 O3
O2
O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 GLY A:161 A:161 2.0 0.027 T 85.6 8.4 2.0 0.027 0.0 PLP
HOH
 9.161
3.897
 N
O
 C2A
O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 GLY A:156 A:161 1.0 0.013 T 83.5 16.7 1.0 0.013 0.0 PLP
HOH
 7.544
2.874
 H
O
 H2A1
O
GLY B:156 B:161 2.0 0.027 T 78.5 17.5 2.0 0.027 0.0 PLP
HOH
 7.634
2.915
 H
HA3
 HO3
O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 GLY A:156 A:161 2.0 0.027 T 77.5 18.6 2.0 0.027 0.0 PLR
HOH
 7.580
2.877
 H
O
 H2A1
O
GLY B:156 B:161 2.0 0.027 T 76.9 18.4 2.0 0.027 0.0 PLR
HOH
 7.531
2.970
 H
O
 HO3
O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 GLY A:161 A:161 2.0 0.027 T 83.8 12.8 2.0 0.027 0.0 PLP
HOH
 9.117
2.840
 N
O
 C2A
O
GLY B:161 B:161 1.0 0.013 T 81.2 20.5 1.0 0.013 0.0 PLP
HOH
 9.146
2.865
 N
O
 C2A
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 GLY A:161 A:161 1.0 0.013 T 76.8 20.2