Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241810832 . C A CCDS2543.1:NM_000030.2:c.490Cag>Aag_NP_000021.1:p.164Q>K Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 GLN A:164 A:164 2.0 0.011 -98.9 123.1 2.0 0.011 0.0 HOH
 3.681
 CG
 O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 GLN A:164 A:164 6.0 0.033 -115.4 129.2 6.0 0.033 0.0 HOH
 4.060
 C
 O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 GLN A:164 A:164 2.0 0.011 -64.0 125.6 2.0 0.011 0.0 HOH
 5.931
 OE1
 O
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 GLN A:164 A:164 8.0 0.044 -69.2 131.2 8.0 0.044 0.0 HOH
 6.301
 NE2
 O
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 GLN A:166 A:164 1.0 0.006 -80.1 125.8 1.0 0.006 0.0 HOH
 2.704
 OE1
 O
GLN C:166 C:164 4.0 0.022 -76.3 128.5 4.0 0.022 0.0 HOH
 2.644
 O
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 GLN A:164 A:164 2.0 0.011 -89.3 125.6 2.0 0.011 0.0 HOH
 7.735
 CB
 O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 GLN A:166 A:164 3.0 0.017 -83.5 127.2 3.0 0.017 0.0 BME
HOH
 2.844
2.891
 O
OE1
 O1
O
GLN B:166 C:164 2.0 0.011 -76.1 121.7 2.0 0.011 0.0 HOH
 2.789
 O
 O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 GLN A:166 A:164 2.0 0.011 -77.5 123.8 2.0 0.011 0.0
GLN B:166 B:164 2.0 0.011 -76.8 122.3 2.0 0.011 0.0
GLN C:166 C:164 2.0 0.011 -77.7 122.8 NA NA NA
GLN D:166 D:164 2.0 0.011 -77.6 122.6 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 GLN A:164 A:164 4.0 0.022 -85.1 137.9 4.0 0.022 0.0 HOH
 2.829
 CG
 O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 GLN A:175 A:164 2.0 0.011 -82.5 121.7 2.0 0.011 0.0 HOH
 2.799
 O
 O
GLN B:175 B:164 2.0 0.011 -79.7 121.4 2.0 0.011 0.0 HOH
 2.793
 OE1
 O
GLN C:175 E:164 3.0 0.017 -81.2 121.2 NA NA NA
GLN D:175 G:164 2.0 0.011 -76.2 118.8 NA NA NA
GLN E:175 M:164 2.0 0.011 -83.1 123.7 NA NA NA
GLN F:175 N:164 2.0 0.011 -81.6 119.9 NA NA NA
GLN G:175 S:164 2.0 0.011 -76.7 120.9 NA NA NA
GLN H:175 T:164 2.0 0.011 -79.8 122.7 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 GLN A:166 A:164 3.0 0.017 -79.4 128.0 3.0 0.017 0.0 HOH
 5.276
 O
 O
GLN B:166 C:164 2.0 0.011 -74.3 121.4 2.0 0.011 0.0 HOH
 5.345
 O
 O
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 GLN A:164 A:164 3.0 0.017 -79.7 127.2 3.0 0.017 0.0 HOH
 2.755
 O
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 GLN A:164 A:164 2.0 0.011 -80.5 127.8 2.0 0.011 0.0 HOH
 3.405
 CB
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 GLN A:159 A:164 2.0 0.011 -78.7 121.3 2.0 0.011 0.0 PLP
HOH
 8.957
2.683
 H
HB2
 H2A2
O
GLN B:159 B:164 2.0 0.011 -81.7 121.2 2.0 0.011 0.0 PLP
HOH
 8.922
2.635
 HB3
HB2
 H2A3
O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 GLN A:159 A:164 2.0 0.011 -76.0 122.9 2.0 0.011 0.0 PLR
HOH
 9.028
2.673
 H
HB2
 H2A3
O
GLN B:159 B:164 2.0 0.011 -77.5 121.7 2.0 0.011 0.0 PLR
HOH
 8.951
2.581
 HB3
HB2
 H2A3
O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 GLN A:164 A:164 2.0 0.011 -79.1 123.9 2.0 0.011 0.0 HOH
 2.700
 O
 O
GLN B:164 B:164 3.0 0.017 -79.7 122.5 3.0 0.017 0.0 GOL
HOH
 7.116
2.696
 NE2
O
 O3
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 GLN A:164 A:164 2.0 0.011 -76.2 123.1