Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241810850 . G A CCDS2543.1:NM_000030.2:c.508Ggg>Agg_NP_000021.1:p.170G>R Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 GLY A:170 A:170 1.0 0.013 H -45.9 -56.0 1.0 0.013 0.0 HOH
 3.368
 N
 O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 GLY A:170 A:170 0.0 0.0 H -67.7 -44.4 0.0 0.0 0.0
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 GLY A:170 A:170 0.0 0.0 H -62.7 -44.2 0.0 0.0 0.0
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 GLY A:170 A:170 0.0 0.0 H -56.8 -45.0 0.0 0.0 0.0
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 GLY A:172 A:170 0.0 0.0 H -63.5 -55.3 0.0 0.0 0.0 HOH
 3.005
 N
 O
GLY C:172 C:170 0.0 0.0 H -63.9 -64.6 0.0 0.0 0.0 HOH
 3.401
 N
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 GLY A:170 A:170 0.0 0.0 H -61.2 -53.4 0.0 0.0 0.0 HOH
 5.490
 O
 O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 GLY A:172 A:170 0.0 0.0 H -57.0 -58.2 0.0 0.0 0.0 HOH
 3.010
 N
 O
GLY B:172 C:170 0.0 0.0 H -62.6 -52.9 0.0 0.0 0.0 HOH
 2.899
 N
 O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 GLY A:172 A:170 0.0 0.0 H -52.3 -60.3 0.0 0.0 0.0
GLY B:172 B:170 0.0 0.0 H -54.4 -60.2 0.0 0.0 0.0
GLY C:172 C:170 0.0 0.0 H -52.6 -61.7 NA NA NA
GLY D:172 D:170 0.0 0.0 H -53.5 -60.7 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 ARG A:170 A:170 151.0 0.671 H -56.7 -69.6 151.0 0.671 0.0 GOL
HOH
 3.218
8.151
 NH1
NH2
 O2
O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 GLY A:181 A:170 0.0 0.0 H -66.5 -46.1 0.0 0.0 0.0 HOH
 2.880
 N
 O
GLY B:181 B:170 0.0 0.0 H -61.1 -45.9 0.0 0.0 0.0 HOH
 2.751
 N
 O
GLY C:181 E:170 0.0 0.0 H -64.9 -48.1 NA NA NA
GLY D:181 G:170 0.0 0.0 H -64.7 -48.7 NA NA NA
GLY E:181 M:170 0.0 0.0 H -59.3 -52.3 NA NA NA
GLY F:181 N:170 0.0 0.0 H -63.3 -53.9 NA NA NA
GLY G:181 S:170 0.0 0.0 H -64.7 -48.1 NA NA NA
GLY H:181 T:170 0.0 0.0 H -64.0 -46.0 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 GLY A:172 A:170 1.0 0.013 H -61.7 -59.8 1.0 0.013 0.0 HOH
 3.477
 N
 O
GLY B:172 C:170 1.0 0.013 H -62.0 -64.2 1.0 0.013 0.0 HOH
 6.206
 O
 O
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 GLY A:170 A:170 0.0 0.0 H -63.4 -51.7 0.0 0.0 0.0 HOH
 3.322
 C
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 GLY A:170 A:170 0.0 0.0 H -68.9 -39.0 0.0 0.0 0.0 HOH
 2.746
 N
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 GLY A:165 A:170 0.0 0.0 H -58.6 -52.5 0.0 0.0 0.0 HOH
 2.119
 H
 O
GLY B:165 B:170 0.0 0.0 H -62.1 -47.9 0.0 0.0 0.0 HOH
 2.017
 H
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 GLY A:165 A:170 0.0 0.0 H -61.0 -49.9 0.0 0.0 0.0 HOH
 2.123
 H
 O
GLY B:165 B:170 0.0 0.0 H -59.3 -51.9 0.0 0.0 0.0 HOH
 2.080
 H
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 GLY A:170 A:170 0.0 0.0 H -60.9 -48.7 0.0 0.0 0.0 GOL
HOH
 8.726
3.471
 CA
N
 O3
O
GLY B:170 B:170 0.0 0.0 H -64.6 -50.3 0.0 0.0 0.0 HOH
 2.963
 N
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 GLY A:170 A:170 0.0 0.0 H -62.7 -50.3