Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241810859 . T A CCDS2543.1:NM_000030.2:c.517Tgc>Agc_NP_000021.1:p.173C>S Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 CYS A:173 A:173 0.0 0.0 H -103.6 -46.3 0.0 0.0 0.0 HOH
 7.300
 N
 O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 CYS A:173 A:173 5.0 0.037 H -67.0 -42.9 5.0 0.037 0.0
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 CYS A:173 A:173 5.0 0.037 H -56.2 -44.6 5.0 0.037 0.0
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 CYS A:173 A:173 5.0 0.037 H -49.8 -49.5 5.0 0.037 0.0
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 CYS A:175 A:173 0.0 0.0 H -61.8 -50.0 0.0 0.0 0.0 HOH
 5.576
 O
 O
CYS C:175 C:173 0.0 0.0 H -55.1 -43.1 0.0 0.0 0.0 HOH
 5.677
 O
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 CYS A:173 A:173 6.0 0.044 H -65.3 -47.2 6.0 0.044 0.0 HOH
 3.157
 CA
 O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 CYS A:175 A:173 0.0 0.0 H -57.8 -44.9 0.0 0.0 0.0 HOH
 5.806
 O
 O
CYS B:175 C:173 0.0 0.0 H -49.5 -46.5 0.0 0.0 0.0 BME
HOH
 7.482
5.866
 O
O
 O1
O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 CYS A:175 A:173 0.0 0.0 H -54.8 -36.5 0.0 0.0 0.0
CYS B:175 B:173 0.0 0.0 H -57.0 -35.8 0.0 0.0 0.0
CYS C:175 C:173 0.0 0.0 H -55.6 -36.7 NA NA NA
CYS D:175 D:173 0.0 0.0 H -57.1 -35.3 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 CYS A:173 A:173 4.0 0.03 H -54.8 -33.3 4.0 0.03 0.0
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 CYS A:184 A:173 0.0 0.0 H -55.4 -46.8 0.0 0.0 0.0 HOH
 5.117
 O
 O
CYS B:184 B:173 0.0 0.0 H -55.7 -42.7 0.0 0.0 0.0 HOH
 4.760
 O
 O
CYS C:184 E:173 0.0 0.0 H -58.1 -45.5 NA NA NA
CYS D:184 G:173 0.0 0.0 H -55.0 -43.9 NA NA NA
CYS E:184 M:173 0.0 0.0 H -54.5 -46.9 NA NA NA
CYS F:184 N:173 0.0 0.0 H -55.3 -41.2 NA NA NA
CYS G:184 S:173 0.0 0.0 H -51.9 -46.3 NA NA NA
CYS H:184 T:173 0.0 0.0 H -59.3 -43.0 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 CYS A:175 A:173 0.0 0.0 H -61.6 -37.5 0.0 0.0 0.0 HOH
 7.056
 N
 O
CYS B:175 C:173 0.0 0.0 H -59.1 -43.7 0.0 0.0 0.0 HOH
 6.990
 N
 O
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 CYS A:173 A:173 0.0 0.0 H -53.7 -38.0 0.0 0.0 0.0 HOH
 4.838
 O
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 CYS A:173 A:173 0.0 0.0 H -70.9 -24.3 0.0 0.0 0.0 HOH
 7.244
 N
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 CYS A:168 A:173 0.0 0.0 H -59.2 -41.8 0.0 0.0 0.0 HOH
 4.829
 O
 O
CYS B:168 B:173 0.0 0.0 H -61.6 -39.4 0.0 0.0 0.0 HOH
 5.112
 O
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 CYS A:168 A:173 0.0 0.0 H -58.9 -44.0 0.0 0.0 0.0 HOH
 4.768
 O
 O
CYS B:168 B:173 0.0 0.0 H -60.9 -39.4 0.0 0.0 0.0 HOH
 4.964
 O
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 CYS A:173 A:173 0.0 0.0 H -58.4 -46.8 0.0 0.0 0.0 HOH
 5.035
 O
 O
CYS B:173 B:173 0.0 0.0 H -56.3 -44.3 0.0 0.0 0.0 HOH
 4.750
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 CYS A:173 A:173 0.0 0.0 H -57.3 -43.0