Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr2 | 241810861 | . | C | A | CCDS2543.1:NM_000030.2:c.519tgC>tgA_NP_000021.1:p.173C>* | Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA. |
---|---|---|---|---|---|---|---|
|
|
|
|
PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
1h0c | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2003-06-12 | CYS | A:173 | A:173 | 0.0 | 0.0 | H | -103.6 | -46.3 | 0.0 | 0.0 | 0.0 |
HOH |
7.300 |
N |
O |
||
5og0 | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2017-09-27 | CYS | A:173 | A:173 | 5.0 | 0.037 | H | -67.0 | -42.9 | 5.0 | 0.037 | 0.0 | ||||||
6rv0 | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2020-04-08 | CYS | A:173 | A:173 | 5.0 | 0.037 | H | -56.2 | -44.6 | 5.0 | 0.037 | 0.0 | ||||||
6rv1 | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2020-04-08 | CYS | A:173 | A:173 | 5.0 | 0.037 | H | -49.8 | -49.5 | 5.0 | 0.037 | 0.0 | ||||||
3r9a | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2011-05-11 | CYS | A:175 | A:173 | 0.0 | 0.0 | H | -61.8 | -50.0 | 0.0 | 0.0 | 0.0 |
HOH |
5.576 |
O |
O |
||
CYS | C:175 | C:173 | 0.0 | 0.0 | H | -55.1 | -43.1 | 0.0 | 0.0 | 0.0 |
HOH |
5.677 |
O |
O |
|||||||||
5ofy | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2017-09-27 | CYS | A:173 | A:173 | 6.0 | 0.044 | H | -65.3 | -47.2 | 6.0 | 0.044 | 0.0 |
HOH |
3.157 |
CA |
O |
||
4kyo | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2014-11-19 | CYS | A:175 | A:173 | 0.0 | 0.0 | H | -57.8 | -44.9 | 0.0 | 0.0 | 0.0 |
HOH |
5.806 |
O |
O |
||
CYS | B:175 | C:173 | 0.0 | 0.0 | H | -49.5 | -46.5 | 0.0 | 0.0 | 0.0 |
BME HOH |
7.482 5.866 |
O O |
O1 O |
|||||||||
4i8a | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2013-05-01 | CYS | A:175 | A:173 | 0.0 | 0.0 | H | -54.8 | -36.5 | 0.0 | 0.0 | 0.0 | ||||||
CYS | B:175 | B:173 | 0.0 | 0.0 | H | -57.0 | -35.8 | 0.0 | 0.0 | 0.0 | |||||||||||||
CYS | C:175 | C:173 | 0.0 | 0.0 | H | -55.6 | -36.7 | NA | NA | NA | |||||||||||||
CYS | D:175 | D:173 | 0.0 | 0.0 | H | -57.1 | -35.3 | NA | NA | NA | |||||||||||||
1j04 | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2003-11-11 | CYS | A:173 | A:173 | 4.0 | 0.03 | H | -54.8 | -33.3 | 4.0 | 0.03 | 0.0 | ||||||
5luc | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2017-09-20 | CYS | A:184 | A:173 | 0.0 | 0.0 | H | -55.4 | -46.8 | 0.0 | 0.0 | 0.0 |
HOH |
5.117 |
O |
O |
||
CYS | B:184 | B:173 | 0.0 | 0.0 | H | -55.7 | -42.7 | 0.0 | 0.0 | 0.0 |
HOH |
4.760 |
O |
O |
|||||||||
CYS | C:184 | E:173 | 0.0 | 0.0 | H | -58.1 | -45.5 | NA | NA | NA | |||||||||||||
CYS | D:184 | G:173 | 0.0 | 0.0 | H | -55.0 | -43.9 | NA | NA | NA | |||||||||||||
CYS | E:184 | M:173 | 0.0 | 0.0 | H | -54.5 | -46.9 | NA | NA | NA | |||||||||||||
CYS | F:184 | N:173 | 0.0 | 0.0 | H | -55.3 | -41.2 | NA | NA | NA | |||||||||||||
CYS | G:184 | S:173 | 0.0 | 0.0 | H | -51.9 | -46.3 | NA | NA | NA | |||||||||||||
CYS | H:184 | T:173 | 0.0 | 0.0 | H | -59.3 | -43.0 | NA | NA | NA | |||||||||||||
4kxk | 1 | P21549 | 99.49 | 0.0 |
X-RAY |
2014-11-19 | CYS | A:175 | A:173 | 0.0 | 0.0 | H | -61.6 | -37.5 | 0.0 | 0.0 | 0.0 |
HOH |
7.056 |
N |
O |
||
CYS | B:175 | C:173 | 0.0 | 0.0 | H | -59.1 | -43.7 | 0.0 | 0.0 | 0.0 |
HOH |
6.990 |
N |
O |
|||||||||
4cbr | 1 | P21549 | 99.23 | 0.0 |
X-RAY |
2014-07-09 | CYS | A:173 | A:173 | 0.0 | 0.0 | H | -53.7 | -38.0 | 0.0 | 0.0 | 0.0 |
HOH |
4.838 |
O |
O |
||
4cbs | 1 | P21549 | 98.72 | 0.0 |
X-RAY |
2014-07-09 | CYS | A:173 | A:173 | 0.0 | 0.0 | H | -70.9 | -24.3 | 0.0 | 0.0 | 0.0 |
HOH |
7.244 |
N |
O |
||
5f9s | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2016-12-21 | CYS | A:168 | A:173 | 0.0 | 0.0 | H | -59.2 | -41.8 | 0.0 | 0.0 | 0.0 |
HOH |
4.829 |
O |
O |
||
CYS | B:168 | B:173 | 0.0 | 0.0 | H | -61.6 | -39.4 | 0.0 | 0.0 | 0.0 |
HOH |
5.112 |
O |
O |
|||||||||
5hhy | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2017-01-25 | CYS | A:168 | A:173 | 0.0 | 0.0 | H | -58.9 | -44.0 | 0.0 | 0.0 | 0.0 |
HOH |
4.768 |
O |
O |
||
CYS | B:168 | B:173 | 0.0 | 0.0 | H | -60.9 | -39.4 | 0.0 | 0.0 | 0.0 |
HOH |
4.964 |
O |
O |
|||||||||
2yob | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2013-10-30 | CYS | A:173 | A:173 | 0.0 | 0.0 | H | -58.4 | -46.8 | 0.0 | 0.0 | 0.0 |
HOH |
5.035 |
O |
O |
||
CYS | B:173 | B:173 | 0.0 | 0.0 | H | -56.3 | -44.3 | 0.0 | 0.0 | 0.0 |
HOH |
4.750 |
O |
O |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-p21549-f1 | 1 | P21549 | 100.0 | 0.0 | CYS | A:173 | A:173 | 0.0 | 0.0 | H | -57.3 | -43.0 |