Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241812400 . A C CCDS2543.1:NM_000030.2:c.529Aag>Cag_NP_000021.1:p.177K>Q Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 LYS A:177 A:177 63.0 NA T 53.5 32.6 63.0 NA NA HOH
 4.949
 O
 O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 LYS A:177 A:177 85.0 NA T 56.6 10.4 85.0 NA NA
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 LYS A:177 A:177 64.0 NA T 67.4 8.9 64.0 NA NA
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 LYS A:177 A:177 86.0 NA T 81.6 -3.5 86.0 NA NA
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 LYS A:179 A:177 180.0 0.9 T 62.6 33.8 180.0 0.9 0.0 HOH
 4.351
 C
 O
LYS C:179 C:177 118.0 NA T 53.4 28.4 118.0 NA NA HOH
 2.841
 O
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 LYS A:177 A:177 116.0 NA T 53.1 3.7 116.0 NA NA HOH
 6.073
 O
 O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 LYS A:179 A:177 190.0 0.95 T 53.9 46.1 190.0 0.95 0.0 HOH
 3.189
 O
 O
LYS B:179 C:177 197.0 0.985 T 54.1 41.4 197.0 0.985 0.0 BME
HOH
 2.951
4.627
 O
C
 O1
O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 LYS A:179 A:177 158.0 NA T 54.2 58.2 158.0 NA NA
LYS B:179 B:177 135.0 NA T 54.9 58.3 135.0 NA NA
LYS C:179 C:177 134.0 NA T 53.3 59.4 NA NA NA
LYS D:179 D:177 133.0 NA T 54.4 58.2 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 LYS A:177 A:177 65.0 NA T 52.0 33.2 65.0 NA NA HOH
 9.576
 N
 O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 LYS A:188 A:177 114.0 NA T 58.1 37.6 114.0 NA NA HOH
 2.772
 O
 O
LYS B:188 B:177 136.0 NA T 53.6 42.5 136.0 NA NA HOH
 3.032
 O
 O
LYS C:188 E:177 140.0 NA T 57.4 39.9 NA NA NA
LYS D:188 G:177 132.0 NA T 57.5 33.3 NA NA NA
LYS E:188 M:177 136.0 NA T 50.6 41.3 NA NA NA
LYS F:188 N:177 139.0 NA T 58.4 38.3 NA NA NA
LYS G:188 S:177 139.0 NA T 59.4 33.9 NA NA NA
LYS H:188 T:177 135.0 NA T 59.2 37.0 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 LYS A:179 A:177 184.0 0.92 T 57.9 39.4 184.0 0.92 0.0
LYS B:179 C:177 190.0 0.95 T 58.6 49.2 190.0 0.95 0.0 HOH
 7.524
 N
 O
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 LYS A:177 A:177 178.0 0.89 T 54.2 33.5 178.0 0.89 0.0 HOH
 2.972
 O
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 LYS A:177 A:177 192.0 0.96 G 39.4 42.1 192.0 0.96 0.0
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 LYS A:172 A:177 169.0 0.845 T 52.7 40.7 169.0 0.845 0.0 HOH
 2.224
 HZ2
 O
LYS B:172 B:177 153.0 0.765 T 59.9 37.8 153.0 0.765 0.0 HOH
 2.694
 O
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 LYS A:172 A:177 167.0 0.835 T 55.8 40.5 167.0 0.835 0.0 HOH
 2.392
 HG3
 O
LYS B:172 B:177 171.0 0.855 T 55.9 43.7 171.0 0.855 0.0 HOH
 2.480
 HD3
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 LYS A:177 A:177 189.0 0.945 T 54.1 43.7 189.0 0.945 0.0 HOH
 2.804
 O
 O
LYS B:177 B:177 184.0 0.92 T 58.3 36.9 184.0 0.92 0.0 HOH
 2.848
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 LYS A:177 A:177 194.0 0.97 T 56.6 31.6