Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr2 | 241812404 | . | G | A | CCDS2543.1:NM_000030.2:c.533tGc>tAc_NP_000021.1:p.178C>Y | Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
1h0c | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2003-06-12 | CYS | A:178 | A:178 | 1.0 | 0.007 | -109.0 | 141.6 | 1.0 | 0.007 | 0.0 |
HOH |
5.962 |
N |
O |
|||
5og0 | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2017-09-27 | CYS | A:178 | A:178 | 5.0 | 0.037 | -86.3 | 161.7 | 5.0 | 0.037 | 0.0 | |||||||
6rv0 | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2020-04-08 | CYS | A:178 | A:178 | 0.0 | 0.0 | -79.3 | 154.0 | 0.0 | 0.0 | 0.0 | |||||||
6rv1 | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2020-04-08 | CYS | A:178 | A:178 | 1.0 | 0.007 | -70.6 | 154.7 | 1.0 | 0.007 | 0.0 | |||||||
3r9a | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2011-05-11 | CYS | A:180 | A:178 | 2.0 | 0.015 | -114.4 | 149.6 | 2.0 | 0.015 | 0.0 |
HOH |
4.013 |
CB |
O |
|||
CYS | C:180 | C:178 | 2.0 | 0.015 | -107.0 | 147.8 | 2.0 | 0.015 | 0.0 |
HOH |
3.886 |
CB |
O |
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5ofy | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2017-09-27 | CYS | A:178 | A:178 | 3.0 | 0.022 | -81.3 | 162.3 | 3.0 | 0.022 | 0.0 |
HOH |
4.330 |
CB |
O |
|||
4kyo | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2014-11-19 | CYS | A:180 | A:178 | 2.0 | 0.015 | -122.5 | 142.1 | 2.0 | 0.015 | 0.0 |
HOH |
4.091 |
CA |
O |
|||
CYS | B:180 | C:178 | 2.0 | 0.015 | -117.9 | 141.8 | 2.0 | 0.015 | 0.0 |
BME HOH |
4.947 4.222 |
N CB |
O1 O |
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4i8a | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2013-05-01 | CYS | A:180 | A:178 | 8.0 | 0.059 | -153.3 | 147.4 | 8.0 | 0.059 | 0.0 | |||||||
CYS | B:180 | B:178 | 6.0 | 0.044 | -152.9 | 147.0 | 6.0 | 0.044 | 0.0 | ||||||||||||||
CYS | C:180 | C:178 | 8.0 | 0.059 | -153.3 | 147.7 | NA | NA | NA | ||||||||||||||
CYS | D:180 | D:178 | 6.0 | 0.044 | -152.9 | 147.0 | NA | NA | NA | ||||||||||||||
1j04 | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2003-11-11 | CYS | A:178 | A:178 | 5.0 | 0.037 | -106.9 | 131.8 | 5.0 | 0.037 | 0.0 |
HOH |
9.617 |
O |
O |
|||
5luc | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2017-09-20 | CYS | A:189 | A:178 | 4.0 | 0.03 | -114.5 | 136.2 | 4.0 | 0.03 | 0.0 |
HOH |
3.660 |
O |
O |
|||
CYS | B:189 | B:178 | 2.0 | 0.015 | -115.7 | 141.2 | 2.0 | 0.015 | 0.0 |
HOH |
3.248 |
O |
O |
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CYS | C:189 | E:178 | 3.0 | 0.022 | -118.8 | 138.8 | NA | NA | NA | ||||||||||||||
CYS | D:189 | G:178 | 2.0 | 0.015 | -111.7 | 140.2 | NA | NA | NA | ||||||||||||||
CYS | E:189 | M:178 | 2.0 | 0.015 | -115.5 | 139.7 | NA | NA | NA | ||||||||||||||
CYS | F:189 | N:178 | 2.0 | 0.015 | -114.3 | 137.9 | NA | NA | NA | ||||||||||||||
CYS | G:189 | S:178 | 2.0 | 0.015 | -110.8 | 143.7 | NA | NA | NA | ||||||||||||||
CYS | H:189 | T:178 | 2.0 | 0.015 | -115.4 | 140.5 | NA | NA | NA | ||||||||||||||
4kxk | 1 | P21549 | 99.49 | 0.0 |
X-RAY |
2014-11-19 | CYS | A:180 | A:178 | 2.0 | 0.015 | -118.3 | 147.6 | 2.0 | 0.015 | 0.0 | |||||||
CYS | B:180 | C:178 | 3.0 | 0.022 | -134.2 | 140.8 | 3.0 | 0.022 | 0.0 |
HOH |
9.755 |
O |
O |
||||||||||
4cbr | 1 | P21549 | 99.23 | 0.0 |
X-RAY |
2014-07-09 | CYS | A:178 | A:178 | 1.0 | 0.007 | -109.5 | 133.8 | 1.0 | 0.007 | 0.0 |
HOH |
2.310 |
SG |
O |
|||
4cbs | 1 | P21549 | 98.72 | 0.0 |
X-RAY |
2014-07-09 | CYS | A:178 | A:178 | 1.0 | 0.007 | -109.9 | 147.4 | 1.0 | 0.007 | 0.0 |
HOH |
9.670 |
O |
O |
|||
5f9s | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2016-12-21 | CYS | A:173 | A:178 | 2.0 | 0.015 | -108.8 | 141.5 | 2.0 | 0.015 | 0.0 |
HOH |
2.890 |
HB2 |
O |
|||
CYS | B:173 | B:178 | 2.0 | 0.015 | -114.7 | 142.7 | 2.0 | 0.015 | 0.0 |
HOH |
2.777 |
HB2 |
O |
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5hhy | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2017-01-25 | CYS | A:173 | A:178 | 2.0 | 0.015 | -110.5 | 141.1 | 2.0 | 0.015 | 0.0 |
HOH |
2.820 |
HB2 |
O |
|||
CYS | B:173 | B:178 | 3.0 | 0.022 | -118.4 | 142.3 | 3.0 | 0.022 | 0.0 |
HOH |
2.882 |
HB2 |
O |
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2yob | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2013-10-30 | CYS | A:178 | A:178 | 3.0 | 0.022 | -122.1 | 140.6 | 3.0 | 0.022 | 0.0 |
HOH |
3.903 |
CA |
O |
|||
CYS | B:178 | B:178 | 3.0 | 0.022 | -117.9 | 140.5 | 3.0 | 0.022 | 0.0 |
HOH |
3.314 |
O |
O |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-p21549-f1 | 1 | P21549 | 100.0 | 0.0 | CYS | A:178 | A:178 | 2.0 | 0.015 | -101.4 | 140.0 |