Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241812422 . C A CCDS2543.1:NM_000030.2:c.551tCg>tAg_NP_000021.1:p.184S>* Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 SER A:184 A:184 0.0 0.0 -114.1 44.7 0.0 0.0 0.0 PLP
HOH
 5.529
3.496
 C
CA
 C2A
O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 SER A:184 A:184 0.0 0.0 -107.7 31.4 0.0 0.0 0.0 PLP
HOH
 5.601
3.548
 C
C
 C2A
O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 SER A:184 A:184 0.0 0.0 -108.4 36.4 0.0 0.0 0.0 PMP
HOH
 5.836
2.974
 C
C
 C2A
O
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 SER A:184 A:184 0.0 0.0 -105.9 27.3 0.0 0.0 0.0 PLP
 5.603
 C
 C2A
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 SER A:186 A:184 0.0 0.0 -118.1 25.5 0.0 0.0 0.0 HOH
 3.378
 C
 O
SER C:186 C:184 0.0 0.0 -119.4 25.5 0.0 0.0 0.0 HOH
 3.401
 C
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 SER A:184 A:184 0.0 0.0 -115.8 33.9 0.0 0.0 0.0 PLP
HOH
 5.408
5.634
 C
O
 C2A
O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 SER A:186 A:184 0.0 0.0 -123.4 31.4 0.0 0.0 0.0 SO4
BME
HOH
 9.128
9.325
3.438
 C
CB
C
 O4
O1
O
SER B:186 C:184 0.0 0.0 -118.6 24.4 0.0 0.0 0.0 SO4
HOH
 9.212
3.553
 C
C
 O1
O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 SER A:186 A:184 0.0 0.0 -121.8 123.3 0.0 0.0 0.0
SER B:186 B:184 0.0 0.0 -123.1 123.1 0.0 0.0 0.0
SER C:186 C:184 0.0 0.0 -120.8 122.9 NA NA NA
SER D:186 D:184 0.0 0.0 -121.5 123.9 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 SER A:184 A:184 0.0 0.0 -124.0 31.8 0.0 0.0 0.0 HOH
 3.609
 CA
 O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 SER A:195 A:184 0.0 0.0 -120.1 31.9 0.0 0.0 0.0 PLP
HOH
 5.808
3.466
 C
CA
 C2A
O
SER B:195 B:184 0.0 0.0 -121.9 33.3 0.0 0.0 0.0 PLP
HOH
 5.952
3.509
 C
CA
 C2A
O
SER C:195 E:184 0.0 0.0 -125.7 29.6 NA NA NA
SER D:195 G:184 0.0 0.0 -120.0 30.0 NA NA NA
SER E:195 M:184 0.0 0.0 -118.8 31.0 NA NA NA
SER F:195 N:184 0.0 0.0 -120.6 30.1 NA NA NA
SER G:195 S:184 0.0 0.0 -117.5 31.9 NA NA NA
SER H:195 T:184 0.0 0.0 -119.4 32.6 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 SER A:186 A:184 0.0 0.0 -126.2 31.4 0.0 0.0 0.0 SO4
HOH
 9.053
3.433
 C
CA
 O4
O
SER B:186 C:184 0.0 0.0 -120.0 28.6 0.0 0.0 0.0 SO4
HOH
 9.095
5.508
 C
C
 O3
O
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 SER A:184 A:184 0.0 0.0 -115.5 38.4 0.0 0.0 0.0 PLP
HOH
 6.148
4.300
 C
O
 C2A
O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 SER A:184 A:184 0.0 0.0 -119.8 33.8 0.0 0.0 0.0 PLP
HOH
 6.031
4.309
 C
O
 C2A
O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 SER A:179 A:184 0.0 0.0 -117.5 28.8 0.0 0.0 0.0 PLP
HOH
 4.672
4.454
 C
O
 H2A2
O
SER B:179 B:184 0.0 0.0 -116.8 30.8 0.0 0.0 0.0 PLP
HOH
 4.616
2.797
 C
HA
 H2A2
O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 SER A:179 A:184 0.0 0.0 -118.5 27.1 0.0 0.0 0.0 PLR
HOH
 4.647
4.406
 C
O
 H2A2
O
SER B:179 B:184 0.0 0.0 -119.7 31.2 0.0 0.0 0.0 PLR
HOH
 4.472
2.735
 C
HA
 H2A2
O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 SER A:184 A:184 0.0 0.0 -118.0 34.8 0.0 0.0 0.0 PLP
HOH
 5.545
3.470
 C
CA
 C2A
O
SER B:184 B:184 0.0 0.0 -121.3 31.6 0.0 0.0 0.0 PLP
HOH
 5.619
3.437
 C
C
 C2A
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 SER A:184 A:184 0.0 0.0 -117.5 20.6