Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241812439 . G A CCDS2543.1:NM_000030.2:c.568Ggg>Agg_NP_000021.1:p.190G>R Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 GLY A:190 A:190 1.0 0.013 T -106.2 -17.7 1.0 0.013 0.0 HOH
 4.519
 N
 O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 GLY A:190 A:190 1.0 0.013 T -119.2 -18.1 1.0 0.013 0.0 HOH
 6.020
 C
 O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 GLY A:190 A:190 1.0 0.013 T -117.7 -4.9 1.0 0.013 0.0 HOH
 6.465
 N
 O
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 GLY A:190 A:190 0.0 0.0 S -125.7 9.0 0.0 0.0 0.0
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 GLY A:192 A:190 1.0 0.013 T -105.1 -11.2 1.0 0.013 0.0 HOH
 2.583
 O
 O
GLY C:192 C:190 1.0 0.013 T -115.5 -4.8 1.0 0.013 0.0 HOH
 2.973
 O
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 GLY A:190 A:190 0.0 0.0 T -125.1 6.6 0.0 0.0 0.0 HOH
 5.334
 N
 O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 GLY A:192 A:190 1.0 0.013 T -111.3 -13.8 1.0 0.013 0.0 BME
HOH
 9.331
3.016
 C
O
 C2
O
GLY B:192 C:190 1.0 0.013 T -110.1 -9.6 1.0 0.013 0.0 HOH
 2.674
 O
 O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 GLY A:192 A:190 14.0 0.187 S 127.1 -114.8 14.0 0.187 0.0
GLY B:192 B:190 3.0 0.04 S 125.0 -116.5 3.0 0.04 0.0
GLY C:192 C:190 9.0 0.12 S 126.1 -114.8 NA NA NA
GLY D:192 D:190 13.0 0.173 S 125.2 -116.9 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 GLY A:190 A:190 0.0 0.0 T -106.7 -11.9 0.0 0.0 0.0 HOH
 4.658
 N
 O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 GLY A:201 A:190 1.0 0.013 T -109.2 -12.1 1.0 0.013 0.0 HOH
 2.862
 O
 O
GLY B:201 B:190 1.0 0.013 T -111.1 -1.3 1.0 0.013 0.0 HOH
 3.005
 O
 O
GLY C:201 E:190 1.0 0.013 T -106.9 -17.3 NA NA NA
GLY D:201 G:190 1.0 0.013 T -104.0 -13.5 NA NA NA
GLY E:201 M:190 1.0 0.013 T -112.6 -8.1 NA NA NA
GLY F:201 N:190 1.0 0.013 T -101.4 -17.7 NA NA NA
GLY G:201 S:190 1.0 0.013 T -113.0 -5.1 NA NA NA
GLY H:201 T:190 1.0 0.013 T -107.0 -8.9 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 GLY A:192 A:190 1.0 0.013 T -115.6 -16.2 1.0 0.013 0.0 HOH
 6.359
 O
 O
GLY B:192 C:190 1.0 0.013 T -109.1 -9.8 1.0 0.013 0.0
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 GLY A:190 A:190 1.0 0.013 T -109.1 -11.6 1.0 0.013 0.0 HOH
 4.655
 O
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 GLY A:190 A:190 0.0 0.0 S -119.5 12.3 0.0 0.0 0.0 HOH
 5.789
 N
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 GLY A:185 A:190 1.0 0.013 T -109.2 -12.7 1.0 0.013 0.0 HOH
 2.731
 O
 O
GLY B:185 B:190 1.0 0.013 T -111.3 -7.3 1.0 0.013 0.0 HOH
 2.981
 O
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 GLY A:185 A:190 1.0 0.013 T -104.9 -15.2 1.0 0.013 0.0 HOH
 2.726
 O
 O
GLY B:185 B:190 1.0 0.013 T -113.5 -9.0 1.0 0.013 0.0 HOH
 2.938
 O
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 GLY A:190 A:190 1.0 0.013 T -103.2 -18.8 1.0 0.013 0.0 HOH
 4.175
 N
 O
GLY B:190 B:190 1.0 0.013 T -108.7 -13.7 1.0 0.013 0.0 HOH
 2.829
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 GLY A:190 A:190 1.0 0.013 T -99.7 -14.8