Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr2 | 241812440 | . | G | A | CCDS2543.1:NM_000030.2:c.569gGg>gAg_NP_000021.1:p.190G>E | Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
1h0c | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2003-06-12 | GLY | A:190 | A:190 | 1.0 | 0.013 | T | -106.2 | -17.7 | 1.0 | 0.013 | 0.0 |
HOH |
4.519 |
N |
O |
||
5og0 | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2017-09-27 | GLY | A:190 | A:190 | 1.0 | 0.013 | T | -119.2 | -18.1 | 1.0 | 0.013 | 0.0 |
HOH |
6.020 |
C |
O |
||
6rv0 | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2020-04-08 | GLY | A:190 | A:190 | 1.0 | 0.013 | T | -117.7 | -4.9 | 1.0 | 0.013 | 0.0 |
HOH |
6.465 |
N |
O |
||
6rv1 | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2020-04-08 | GLY | A:190 | A:190 | 0.0 | 0.0 | S | -125.7 | 9.0 | 0.0 | 0.0 | 0.0 | ||||||
3r9a | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2011-05-11 | GLY | A:192 | A:190 | 1.0 | 0.013 | T | -105.1 | -11.2 | 1.0 | 0.013 | 0.0 |
HOH |
2.583 |
O |
O |
||
GLY | C:192 | C:190 | 1.0 | 0.013 | T | -115.5 | -4.8 | 1.0 | 0.013 | 0.0 |
HOH |
2.973 |
O |
O |
|||||||||
5ofy | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2017-09-27 | GLY | A:190 | A:190 | 0.0 | 0.0 | T | -125.1 | 6.6 | 0.0 | 0.0 | 0.0 |
HOH |
5.334 |
N |
O |
||
4kyo | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2014-11-19 | GLY | A:192 | A:190 | 1.0 | 0.013 | T | -111.3 | -13.8 | 1.0 | 0.013 | 0.0 |
BME HOH |
9.331 3.016 |
C O |
C2 O |
||
GLY | B:192 | C:190 | 1.0 | 0.013 | T | -110.1 | -9.6 | 1.0 | 0.013 | 0.0 |
HOH |
2.674 |
O |
O |
|||||||||
4i8a | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2013-05-01 | GLY | A:192 | A:190 | 14.0 | 0.187 | S | 127.1 | -114.8 | 14.0 | 0.187 | 0.0 | ||||||
GLY | B:192 | B:190 | 3.0 | 0.04 | S | 125.0 | -116.5 | 3.0 | 0.04 | 0.0 | |||||||||||||
GLY | C:192 | C:190 | 9.0 | 0.12 | S | 126.1 | -114.8 | NA | NA | NA | |||||||||||||
GLY | D:192 | D:190 | 13.0 | 0.173 | S | 125.2 | -116.9 | NA | NA | NA | |||||||||||||
1j04 | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2003-11-11 | GLY | A:190 | A:190 | 0.0 | 0.0 | T | -106.7 | -11.9 | 0.0 | 0.0 | 0.0 |
HOH |
4.658 |
N |
O |
||
5luc | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2017-09-20 | GLY | A:201 | A:190 | 1.0 | 0.013 | T | -109.2 | -12.1 | 1.0 | 0.013 | 0.0 |
HOH |
2.862 |
O |
O |
||
GLY | B:201 | B:190 | 1.0 | 0.013 | T | -111.1 | -1.3 | 1.0 | 0.013 | 0.0 |
HOH |
3.005 |
O |
O |
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GLY | C:201 | E:190 | 1.0 | 0.013 | T | -106.9 | -17.3 | NA | NA | NA | |||||||||||||
GLY | D:201 | G:190 | 1.0 | 0.013 | T | -104.0 | -13.5 | NA | NA | NA | |||||||||||||
GLY | E:201 | M:190 | 1.0 | 0.013 | T | -112.6 | -8.1 | NA | NA | NA | |||||||||||||
GLY | F:201 | N:190 | 1.0 | 0.013 | T | -101.4 | -17.7 | NA | NA | NA | |||||||||||||
GLY | G:201 | S:190 | 1.0 | 0.013 | T | -113.0 | -5.1 | NA | NA | NA | |||||||||||||
GLY | H:201 | T:190 | 1.0 | 0.013 | T | -107.0 | -8.9 | NA | NA | NA | |||||||||||||
4kxk | 1 | P21549 | 99.49 | 0.0 |
X-RAY |
2014-11-19 | GLY | A:192 | A:190 | 1.0 | 0.013 | T | -115.6 | -16.2 | 1.0 | 0.013 | 0.0 |
HOH |
6.359 |
O |
O |
||
GLY | B:192 | C:190 | 1.0 | 0.013 | T | -109.1 | -9.8 | 1.0 | 0.013 | 0.0 | |||||||||||||
4cbr | 1 | P21549 | 99.23 | 0.0 |
X-RAY |
2014-07-09 | GLY | A:190 | A:190 | 1.0 | 0.013 | T | -109.1 | -11.6 | 1.0 | 0.013 | 0.0 |
HOH |
4.655 |
O |
O |
||
4cbs | 1 | P21549 | 98.72 | 0.0 |
X-RAY |
2014-07-09 | GLY | A:190 | A:190 | 0.0 | 0.0 | S | -119.5 | 12.3 | 0.0 | 0.0 | 0.0 |
HOH |
5.789 |
N |
O |
||
5f9s | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2016-12-21 | GLY | A:185 | A:190 | 1.0 | 0.013 | T | -109.2 | -12.7 | 1.0 | 0.013 | 0.0 |
HOH |
2.731 |
O |
O |
||
GLY | B:185 | B:190 | 1.0 | 0.013 | T | -111.3 | -7.3 | 1.0 | 0.013 | 0.0 |
HOH |
2.981 |
O |
O |
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5hhy | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2017-01-25 | GLY | A:185 | A:190 | 1.0 | 0.013 | T | -104.9 | -15.2 | 1.0 | 0.013 | 0.0 |
HOH |
2.726 |
O |
O |
||
GLY | B:185 | B:190 | 1.0 | 0.013 | T | -113.5 | -9.0 | 1.0 | 0.013 | 0.0 |
HOH |
2.938 |
O |
O |
|||||||||
2yob | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2013-10-30 | GLY | A:190 | A:190 | 1.0 | 0.013 | T | -103.2 | -18.8 | 1.0 | 0.013 | 0.0 |
HOH |
4.175 |
N |
O |
||
GLY | B:190 | B:190 | 1.0 | 0.013 | T | -108.7 | -13.7 | 1.0 | 0.013 | 0.0 |
HOH |
2.829 |
O |
O |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-p21549-f1 | 1 | P21549 | 100.0 | 0.0 | GLY | A:190 | A:190 | 1.0 | 0.013 | T | -99.7 | -14.8 |