Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241812454 . A C CCDS2543.1:NM_000030.2:c.583Atg>Ctg_NP_000021.1:p.195M>L Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 MET A:195 A:195 0.0 0.0 T -55.1 -62.3 0.0 0.0 0.0 HOH
 3.527
 CG
 O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 MET A:195 A:195 0.0 0.0 T -61.9 -50.8 0.0 0.0 0.0 HOH
 6.115
 N
 O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 MET A:195 A:195 0.0 0.0 T -59.1 -61.9 0.0 0.0 0.0 HOH
 6.431
 N
 O
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 MET A:195 A:195 0.0 0.0 T -52.8 -62.7 0.0 0.0 0.0
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 MET A:197 A:195 0.0 0.0 T -54.7 -54.6 0.0 0.0 0.0 HOH
 3.357
 CE
 O
MET C:197 C:195 0.0 0.0 T -53.4 -62.8 0.0 0.0 0.0 HOH
 3.705
 N
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 MET A:195 A:195 0.0 0.0 T -56.3 -61.2 0.0 0.0 0.0 HOH
 6.362
 N
 O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 MET A:197 A:195 0.0 0.0 T -54.9 -55.4 0.0 0.0 0.0 BME
HOH
 8.779
3.530
 N
CE
 C2
O
MET B:197 C:195 0.0 0.0 T -57.2 -56.3 0.0 0.0 0.0 HOH
 3.635
 CE
 O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 MET A:197 A:195 0.0 0.0 H -59.2 -58.0 0.0 0.0 0.0
MET B:197 B:195 0.0 0.0 H -59.7 -56.7 0.0 0.0 0.0
MET C:197 C:195 0.0 0.0 H -59.0 -57.7 NA NA NA
MET D:197 D:195 0.0 0.0 H -59.9 -57.4 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 MET A:195 A:195 0.0 0.0 T -42.1 -73.9 0.0 0.0 0.0 GOL
HOH
 6.575
3.661
 O
CE
 C2
O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 MET A:206 A:195 0.0 0.0 T -57.9 -55.7 0.0 0.0 0.0 HOH
 3.618
 CE
 O
MET B:206 B:195 0.0 0.0 T -57.5 -55.4 0.0 0.0 0.0 HOH
 3.586
 CE
 O
MET C:206 E:195 0.0 0.0 T -52.6 -56.7 NA NA NA
MET D:206 G:195 0.0 0.0 T -60.3 -53.9 NA NA NA
MET E:206 M:195 0.0 0.0 T -60.6 -53.2 NA NA NA
MET F:206 N:195 0.0 0.0 T -58.6 -53.9 NA NA NA
MET G:206 S:195 0.0 0.0 T -56.9 -51.6 NA NA NA
MET H:206 T:195 0.0 0.0 T -60.3 -50.6 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 MET A:197 A:195 0.0 0.0 T -51.6 -54.1 0.0 0.0 0.0 HOH
 8.302
 O
 O
MET B:197 C:195 0.0 0.0 T -48.2 -57.6 0.0 0.0 0.0 HOH
 7.558
 CE
 O
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 MET A:195 A:195 0.0 0.0 T -48.5 -52.5 0.0 0.0 0.0 HOH
 6.076
 CG
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 MET A:195 A:195 0.0 0.0 T -54.7 -66.3 0.0 0.0 0.0 HOH
 3.327
 N
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 MET A:190 A:195 0.0 0.0 T -58.0 -54.6 0.0 0.0 0.0 HOH
 2.891
 HG2
 O
MET B:190 B:195 0.0 0.0 T -61.6 -55.1 0.0 0.0 0.0 HOH
 2.829
 HE2
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 MET A:190 A:195 0.0 0.0 T -57.9 -53.7 0.0 0.0 0.0 HOH
 2.675
 HE2
 O
MET B:190 B:195 0.0 0.0 T -60.0 -56.0 0.0 0.0 0.0 HOH
 2.741
 HE2
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 MET A:195 A:195 0.0 0.0 T -55.8 -59.0 0.0 0.0 0.0 GOL
HOH
 5.410
3.563
 O
CE
 O3
O
MET B:195 B:195 0.0 0.0 T -58.7 -53.5 0.0 0.0 0.0 HOH
 3.722
 N
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 MET A:195 A:195 0.0 0.0 T -50.3 -54.3