Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241812464 . A C CCDS2543.1:NM_000030.2:c.593cAa>cCa_NP_000021.1:p.198Q>P Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 GLN A:198 A:198 18.0 0.1 T -106.8 9.5 18.0 0.1 0.0 HOH
 3.773
 O
 O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 GLN A:198 A:198 12.0 0.067 T -101.8 11.2 12.0 0.067 0.0 HOH
 6.352
 NE2
 O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 GLN A:198 A:198 16.0 0.089 T -91.4 3.5 16.0 0.089 0.0 HOH
 6.704
 OE1
 O
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 GLN A:198 A:198 25.0 0.139 G -100.7 3.2 25.0 0.139 0.0
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 GLN A:200 A:198 21.0 0.117 T -90.3 8.1 21.0 0.117 0.0 HOH
 2.996
 NE2
 O
GLN C:200 C:198 19.0 0.106 T -93.6 7.0 19.0 0.106 0.0 HOH
 2.907
 NE2
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 GLN A:198 A:198 17.0 0.094 G -115.9 8.8 17.0 0.094 0.0 HOH
 6.262
 C
 O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 GLN A:200 A:198 19.0 0.106 T -88.1 8.8 19.0 0.106 0.0 BME
HOH
 3.455
3.407
 NE2
O
 C2
O
GLN B:200 C:198 24.0 0.133 T -91.1 7.6 24.0 0.133 0.0 HOH
 2.600
 O
 O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 GLN A:200 A:198 20.0 0.111 H -71.6 -4.6 20.0 0.111 0.0
GLN B:200 B:198 28.0 0.156 H -71.8 -5.2 28.0 0.156 0.0
GLN C:200 C:198 22.0 0.122 H -72.6 -3.7 NA NA NA
GLN D:200 D:198 24.0 0.133 H -71.8 -4.6 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 GLN A:198 A:198 22.0 0.122 T -94.9 5.1 22.0 0.122 0.0 GOL
HOH
 5.507
3.678
 N
NE2
 O2
O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 GLN A:209 A:198 21.0 0.117 T -91.9 6.5 21.0 0.117 0.0 HOH
 2.697
 O
 O
GLN B:209 B:198 23.0 0.128 T -95.7 6.8 23.0 0.128 0.0 HOH
 2.613
 O
 O
GLN C:209 E:198 19.0 0.106 T -95.7 6.3 NA NA NA
GLN D:209 G:198 21.0 0.117 T -92.7 6.9 NA NA NA
GLN E:209 M:198 21.0 0.117 T -98.4 6.7 NA NA NA
GLN F:209 N:198 19.0 0.106 T -95.0 3.1 NA NA NA
GLN G:209 S:198 19.0 0.106 T -94.2 4.2 NA NA NA
GLN H:209 T:198 20.0 0.111 T -95.1 7.0 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 GLN A:200 A:198 24.0 0.133 T -88.3 5.6 24.0 0.133 0.0 HOH
 4.008
 O
 O
GLN B:200 C:198 22.0 0.122 T -98.6 10.2 22.0 0.122 0.0 HOH
 4.473
 NE2
 O
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 GLN A:198 A:198 15.0 0.083 T -96.9 9.9 15.0 0.083 0.0 HOH
 3.674
 O
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 GLN A:198 A:198 15.0 0.083 T -98.1 11.8 15.0 0.083 0.0 HOH
 2.094
 O
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 GLN A:193 A:198 20.0 0.111 T -93.6 7.4 20.0 0.111 0.0 HOH
 2.148
 HE22
 O
GLN B:193 B:198 16.0 0.089 T -86.1 6.2 16.0 0.089 0.0 HOH
 2.033
 HE22
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 GLN A:193 A:198 19.0 0.106 T -92.2 8.2 19.0 0.106 0.0 HOH
 2.182
 HE22
 O
GLN B:193 B:198 15.0 0.083 T -87.2 7.3 15.0 0.083 0.0 HOH
 2.024
 HE22
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 GLN A:198 A:198 19.0 0.106 T -94.2 10.5 19.0 0.106 0.0 GOL
HOH
 7.019
3.213
 C
NE2
 O3
O
GLN B:198 B:198 17.0 0.094 T -91.0 4.8 17.0 0.094 0.0 HOH
 2.584
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 GLN A:198 A:198 19.0 0.106 T -86.7 2.5