Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241812466 . G A CCDS2543.1:NM_000030.2:c.595Ggc>Agc_NP_000021.1:p.199G>S Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 GLY A:199 A:199 16.0 0.213 T 52.4 38.1 16.0 0.213 0.0 HOH
 4.796
 N
 O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 GLY A:199 A:199 15.0 0.2 T 46.2 58.9 15.0 0.2 0.0
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 GLY A:199 A:199 19.0 0.253 T 56.6 57.5 19.0 0.253 0.0
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 GLY A:199 A:199 19.0 0.253 T 62.1 55.4 19.0 0.253 0.0
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 GLY A:201 A:199 21.0 0.28 T 58.7 38.2 21.0 0.28 0.0 HOH
 4.050
 CA
 O
GLY C:201 C:199 21.0 0.28 T 58.5 34.8 21.0 0.28 0.0 HOH
 4.287
 N
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 GLY A:199 A:199 22.0 0.293 T 57.1 56.7 22.0 0.293 0.0 HOH
 3.841
 C
 O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 GLY A:201 A:199 22.0 0.293 T 54.5 39.4 22.0 0.293 0.0 HOH
 4.460
 O
 O
GLY B:201 C:199 20.0 0.267 T 65.7 28.1 20.0 0.267 0.0 HOH
 4.735
 N
 O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 GLY A:201 A:199 18.0 0.24 T 73.6 21.5 18.0 0.24 0.0
GLY B:201 B:199 16.0 0.213 T 76.1 20.0 16.0 0.213 0.0
GLY C:201 C:199 16.0 0.213 T 72.7 20.3 NA NA NA
GLY D:201 D:199 17.0 0.227 T 72.3 21.6 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 GLY A:199 A:199 18.0 0.24 T 57.7 55.5 18.0 0.24 0.0 GOL
HOH
 5.827
5.592
 N
C
 O2
O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 GLY A:210 A:199 21.0 0.28 T 64.8 27.8 21.0 0.28 0.0 HOH
 3.745
 C
 O
GLY B:210 B:199 23.0 0.307 T 64.7 36.8 23.0 0.307 0.0 HOH
 3.645
 C
 O
GLY C:210 E:199 21.0 0.28 T 66.6 29.3 NA NA NA
GLY D:210 G:199 23.0 0.307 T 67.3 32.4 NA NA NA
GLY E:210 M:199 20.0 0.267 T 73.9 23.4 NA NA NA
GLY F:210 N:199 20.0 0.267 T 72.5 28.8 NA NA NA
GLY G:210 S:199 20.0 0.267 T 72.4 24.3 NA NA NA
GLY H:210 T:199 23.0 0.307 T 66.0 28.9 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 GLY A:201 A:199 22.0 0.293 T 58.0 41.1 22.0 0.293 0.0 HOH
 5.304
 N
 O
GLY B:201 C:199 21.0 0.28 T 53.4 47.0 21.0 0.28 0.0 HOH
 9.359
 CA
 O
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 GLY A:199 A:199 16.0 0.213 T 44.7 59.9 16.0 0.213 0.0 HOH
 4.618
 N
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 GLY A:199 A:199 20.0 0.267 T 50.5 52.6 20.0 0.267 0.0 HOH
 4.291
 N
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 GLY A:194 A:199 19.0 0.253 T 63.9 29.1 19.0 0.253 0.0 HOH
 2.965
 HA2
 O
GLY B:194 B:199 18.0 0.24 T 66.9 28.9 18.0 0.24 0.0 HOH
 2.845
 HA2
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 GLY A:194 A:199 19.0 0.253 T 65.3 27.0 19.0 0.253 0.0 HOH
 2.890
 HA2
 O
GLY B:194 B:199 19.0 0.253 T 66.9 27.3 19.0 0.253 0.0 HOH
 2.964
 HA2
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 GLY A:199 A:199 21.0 0.28 T 61.7 32.7 21.0 0.28 0.0 GOL
HOH
 4.961
3.434
 CA
CA
 O3
O
GLY B:199 B:199 19.0 0.253 T 66.1 30.5 19.0 0.253 0.0 HOH
 3.645
 CA
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 GLY A:199 A:199 17.0 0.227 T 66.4 31.0