Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241813397 . A C CCDS2543.1:NM_000030.2:c.598Atc>Ctc_NP_000021.1:p.200I>L Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 ILE A:200 A:200 3.0 0.017 -82.3 140.2 3.0 0.017 0.0 HOH
 2.611
 O
 O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 ILE A:200 A:200 4.0 0.023 -97.6 138.3 4.0 0.023 0.0 HOH
 8.708
 CD1
 O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 ILE A:200 A:200 3.0 0.017 -95.4 139.4 3.0 0.017 0.0 HOH
 8.798
 O
 O
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 ILE A:200 A:200 4.0 0.023 -97.5 134.2 4.0 0.023 0.0
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 ILE A:202 A:200 4.0 0.023 -81.7 140.0 4.0 0.023 0.0 HOH
 2.715
 O
 O
ILE C:202 C:200 3.0 0.017 -77.7 134.0 3.0 0.017 0.0 HOH
 2.667
 O
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 ILE A:200 A:200 3.0 0.017 -99.8 140.2 3.0 0.017 0.0 HOH
 4.488
 O
 O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 ILE A:202 A:200 4.0 0.023 -83.8 132.6 4.0 0.023 0.0 BME
HOH
 7.464
2.690
 CD1
O
 C1
O
ILE B:202 C:200 4.0 0.023 -80.3 135.4 4.0 0.023 0.0 HOH
 2.966
 O
 O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 ILE A:202 A:200 4.0 0.023 -76.9 131.8 4.0 0.023 0.0
ILE B:202 B:200 4.0 0.023 -78.7 132.6 4.0 0.023 0.0
ILE C:202 C:200 4.0 0.023 -75.7 131.8 NA NA NA
ILE D:202 D:200 4.0 0.023 -76.0 131.4 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 ILE A:200 A:200 5.0 0.029 -101.3 131.1 5.0 0.029 0.0 GOL
HOH
 8.281
3.113
 N
O
 O2
O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 ILE A:211 A:200 4.0 0.023 -76.8 139.6 4.0 0.023 0.0 HOH
 2.904
 O
 O
ILE B:211 B:200 4.0 0.023 -87.4 133.4 4.0 0.023 0.0 HOH
 2.922
 O
 O
ILE C:211 E:200 4.0 0.023 -80.6 136.3 NA NA NA
ILE D:211 G:200 4.0 0.023 -85.0 138.5 NA NA NA
ILE E:211 M:200 5.0 0.029 -80.1 136.6 NA NA NA
ILE F:211 N:200 4.0 0.023 -85.5 132.7 NA NA NA
ILE G:211 S:200 4.0 0.023 -81.2 136.7 NA NA NA
ILE H:211 T:200 4.0 0.023 -78.1 133.6 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 ILE A:202 A:200 4.0 0.023 -83.8 135.2 4.0 0.023 0.0 HOH
 7.072
 N
 O
ILE B:202 C:200 4.0 0.023 -87.8 134.3 4.0 0.023 0.0 HOH
 9.193
 O
 O
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 ILE A:200 A:200 2.0 0.011 -93.0 143.0 2.0 0.011 0.0 HOH
 6.580
 N
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 ILE A:200 A:200 4.0 0.023 -90.9 130.9 4.0 0.023 0.0 HOH
 4.902
 CG1
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 ILE A:195 A:200 2.0 0.011 -78.2 132.4 2.0 0.011 0.0 HOH
 2.802
 O
 O
ILE B:195 B:200 4.0 0.023 -81.5 133.4 4.0 0.023 0.0 HOH
 2.846
 O
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 ILE A:195 A:200 3.0 0.017 -76.1 132.8 3.0 0.017 0.0 HOH
 2.747
 O
 O
ILE B:195 B:200 4.0 0.023 -82.9 131.1 4.0 0.023 0.0 HOH
 2.790
 O
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 ILE A:200 A:200 5.0 0.029 -82.5 132.8 5.0 0.029 0.0 GOL
HOH
 4.199
2.833
 O
O
 O3
O
ILE B:200 B:200 4.0 0.023 -81.3 129.3 4.0 0.023 0.0 HOH
 2.869
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 ILE A:200 A:200 4.0 0.023 -79.6 127.0