Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241813402 . C A CCDS2543.1:NM_000030.2:c.603gaC>gaA_NP_000021.1:p.201D>E Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 ASP A:201 A:201 2.0 0.013 S -91.3 -39.6 2.0 0.013 0.0 HOH
 4.611
 CA
 O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 ASP A:201 A:201 3.0 0.02 S -95.5 -36.2 3.0 0.02 0.0
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 ASP A:201 A:201 3.0 0.02 S -98.4 -47.2 3.0 0.02 0.0 HOH
 7.023
 O
 O
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 ASP A:201 A:201 2.0 0.013 S -95.9 -40.0 2.0 0.013 0.0
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 ASP A:203 A:201 1.0 0.007 S -94.0 -41.8 1.0 0.007 0.0 HOH
 2.651
 OD1
 O
ASP C:203 C:201 6.0 0.04 S -87.8 -38.3 6.0 0.04 0.0 HOH
 4.635
 CA
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 ASP A:201 A:201 6.0 0.04 S -97.2 -43.3 6.0 0.04 0.0 HOH
 2.744
 OD1
 O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 ASP A:203 A:201 3.0 0.02 S -90.2 -38.8 3.0 0.02 0.0 HOH
 2.898
 OD1
 O
ASP B:203 C:201 4.0 0.027 S -95.3 -37.3 4.0 0.027 0.0 HOH
 4.400
 OD1
 O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 ASP A:203 A:201 5.0 0.033 S -92.7 -29.5 5.0 0.033 0.0
ASP B:203 B:201 5.0 0.033 S -94.2 -29.1 5.0 0.033 0.0
ASP C:203 C:201 5.0 0.033 S -95.0 -29.1 NA NA NA
ASP D:203 D:201 5.0 0.033 S -92.7 -30.1 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 ASP A:201 A:201 17.0 0.113 S -84.7 -37.2 17.0 0.113 0.0 HOH
 4.592
 OD1
 O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 ASP A:212 A:201 4.0 0.027 S -95.5 -37.0 4.0 0.027 0.0 HOH
 2.682
 OD1
 O
ASP B:212 B:201 4.0 0.027 S -94.6 -35.9 4.0 0.027 0.0 HOH
 2.577
 OD1
 O
ASP C:212 E:201 5.0 0.033 S -95.8 -36.1 NA NA NA
ASP D:212 G:201 4.0 0.027 S -97.3 -36.8 NA NA NA
ASP E:212 M:201 4.0 0.027 S -96.1 -36.1 NA NA NA
ASP F:212 N:201 4.0 0.027 S -89.9 -39.8 NA NA NA
ASP G:212 S:201 5.0 0.033 S -95.6 -35.1 NA NA NA
ASP H:212 T:201 5.0 0.033 S -93.0 -37.9 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 ASP A:203 A:201 3.0 0.02 S -92.3 -38.3 3.0 0.02 0.0 HOH
 9.512
 OD2
 O
ASP B:203 C:201 3.0 0.02 S -93.8 -31.2 3.0 0.02 0.0 HOH
 7.580
 O
 O
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 ASP A:201 A:201 1.0 0.007 S -92.2 -42.3 1.0 0.007 0.0 HOH
 5.920
 OD2
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 ASP A:201 A:201 1.0 0.007 S -87.0 -44.0 1.0 0.007 0.0 HOH
 6.859
 O
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 ASP A:196 A:201 2.0 0.013 S -91.7 -39.3 2.0 0.013 0.0 HOH
 2.677
 OD1
 O
ASP B:196 B:201 3.0 0.02 S -91.7 -38.7 3.0 0.02 0.0 HOH
 2.481
 OD1
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 ASP A:196 A:201 3.0 0.02 S -91.7 -37.0 3.0 0.02 0.0 HOH
 2.692
 OD1
 O
ASP B:196 B:201 4.0 0.027 S -90.3 -39.5 4.0 0.027 0.0 HOH
 2.493
 OD1
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 ASP A:201 A:201 5.0 0.033 S -92.6 -36.4 5.0 0.033 0.0 GOL
HOH
 4.762
2.598
 OD1
OD1
 O3
O
ASP B:201 B:201 5.0 0.033 S -88.7 -36.0 5.0 0.033 0.0 HOH
 4.253
 OD1
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 ASP A:201 A:201 4.0 0.027 S -88.2 -36.7